Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV175_RS08600 Genome accession   NZ_CP031324
Coordinates   1453584..1454177 (+) Length   197 a.a.
NCBI ID   WP_115437397.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1448584..1459177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS08570 - 1448896..1449483 (-) 588 WP_002242525.1 superoxide dismutase -
  DV175_RS08580 dnaB 1449646..1451052 (+) 1407 WP_061837796.1 replicative DNA helicase -
  DV175_RS08585 pilH 1451361..1452029 (+) 669 WP_061837795.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV175_RS08590 pilV 1452059..1452670 (+) 612 WP_061837797.1 type IV pilus modification protein PilV Machinery gene
  DV175_RS08595 pilJ 1452667..1453605 (+) 939 WP_115437396.1 PilW family protein Machinery gene
  DV175_RS08600 pilK 1453584..1454177 (+) 594 WP_115437397.1 pilus assembly protein Machinery gene
  DV175_RS08605 pilX 1454182..1454655 (+) 474 WP_192881274.1 PilX family type IV pilin Machinery gene
  DV175_RS08630 - 1458114..1458539 (-) 426 Protein_1408 AzlC family ABC transporter permease -
  DV175_RS08635 dut 1458682..1459134 (+) 453 WP_002222651.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21652.49 Da        Isoelectric Point: 5.3764

>NTDB_id=305617 DV175_RS08600 WP_115437397.1 1453584..1454177(+) (pilK) [Neisseria meningitidis strain M23347]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGMEYKKGTQSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=305617 DV175_RS08600 WP_115437397.1 1453584..1454177(+) (pilK) [Neisseria meningitidis strain M23347]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATTCTACCA
ACCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGCAAAGTGTCAGCAAACCACCGCGCTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.129

100

0.893

Multiple sequence alignment