Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DV175_RS08595 Genome accession   NZ_CP031324
Coordinates   1452667..1453605 (+) Length   312 a.a.
NCBI ID   WP_115437396.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M23347     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447667..1458605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV175_RS08570 - 1448896..1449483 (-) 588 WP_002242525.1 superoxide dismutase -
  DV175_RS08580 dnaB 1449646..1451052 (+) 1407 WP_061837796.1 replicative DNA helicase -
  DV175_RS08585 pilH 1451361..1452029 (+) 669 WP_061837795.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV175_RS08590 pilV 1452059..1452670 (+) 612 WP_061837797.1 type IV pilus modification protein PilV Machinery gene
  DV175_RS08595 pilJ 1452667..1453605 (+) 939 WP_115437396.1 PilW family protein Machinery gene
  DV175_RS08600 pilK 1453584..1454177 (+) 594 WP_115437397.1 pilus assembly protein Machinery gene
  DV175_RS08605 pilX 1454182..1454655 (+) 474 WP_192881274.1 PilX family type IV pilin Machinery gene
  DV175_RS08630 - 1458114..1458539 (-) 426 Protein_1408 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34204.86 Da        Isoelectric Point: 8.9770

>NTDB_id=305616 DV175_RS08595 WP_115437396.1 1452667..1453605(+) (pilJ) [Neisseria meningitidis strain M23347]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVPDVAQKNRPFSLKGSSTNKLIPITESSNINYQDFFQVGSALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGGIAGEEGLFRFQLNEKGEWGNPQLLVKKIRHMKVRYIYVS
DCPEDDDAGKEEKFKYTGTFNSAKDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=305616 DV175_RS08595 WP_115437396.1 1452667..1453605(+) (pilJ) [Neisseria meningitidis strain M23347]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTCCCGATGTGGCGCAAAAAAACCGTCCCTTTTCCTTAAAAGG
GAGCAGTACAAATAAACTTATCCCCATAACGGAATCTTCAAATATCAATTATCAGGATTTTTTCCAGGTTGGTAGCGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCGGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGATTAGACATATGAAAGTGCGGTATATCTATGTTTCC
GACTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAAAATTCAAATATACGGGTACATTCAACAGCGCCAAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.696

100

0.817

Multiple sequence alignment