Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DWB97_RS04400 Genome accession   NZ_CP031274
Coordinates   894610..895239 (+) Length   209 a.a.
NCBI ID   WP_037575783.1    Uniprot ID   A0AAE5SZX5
Organism   Staphylococcus chromogenes strain 17A     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 889610..900239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB97_RS04375 (DWB97_04385) - 890281..891291 (-) 1011 WP_105965742.1 aromatic acid exporter family protein -
  DWB97_RS04380 (DWB97_04390) map 891623..892381 (+) 759 WP_037575776.1 type I methionyl aminopeptidase -
  DWB97_RS04385 (DWB97_04395) - 892477..892866 (+) 390 WP_145400674.1 hypothetical protein -
  DWB97_RS04390 (DWB97_04400) liaF 892879..893580 (+) 702 WP_037575779.1 cell wall-active antibiotics response protein LiaF -
  DWB97_RS04395 (DWB97_04405) vraS 893577..894620 (+) 1044 WP_037575781.1 sensor histidine kinase Regulator
  DWB97_RS04400 (DWB97_04410) vraR 894610..895239 (+) 630 WP_037575783.1 response regulator transcription factor Regulator
  DWB97_RS04405 (DWB97_04415) - 895443..896015 (-) 573 WP_107359303.1 carbonic anhydrase -
  DWB97_RS04410 (DWB97_04420) - 896058..897326 (-) 1269 WP_145400675.1 YihY/virulence factor BrkB family protein -
  DWB97_RS04415 (DWB97_04425) - 897452..897727 (-) 276 WP_037575789.1 YtxH domain-containing protein -
  DWB97_RS04420 (DWB97_04430) - 897732..898190 (-) 459 WP_145400676.1 low molecular weight protein-tyrosine-phosphatase -
  DWB97_RS04425 (DWB97_04435) - 898323..898532 (+) 210 WP_037575795.1 DUF1128 domain-containing protein -
  DWB97_RS04430 (DWB97_04440) - 898563..899792 (+) 1230 WP_240917337.1 aminopeptidase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23432.11 Da        Isoelectric Point: 5.1755

>NTDB_id=305317 DWB97_RS04400 WP_037575783.1 894610..895239(+) (vraR) [Staphylococcus chromogenes strain 17A]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIEKAHALKPDLILMDLVMTDMDGVEATTQIKKDLPKIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTSKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305317 DWB97_RS04400 WP_037575783.1 894610..895239(+) (vraR) [Staphylococcus chromogenes strain 17A]
ATGACAATTAAAGTTTTATTTGTAGATGACCACGAAATGGTAAGAATTGGTATCTCAAGTTATTTATCTACGCAGCCAGA
TATTGAAGTTGTTGGGGAAGGGGCTTCGGGTAAAGAAGCCATCGAAAAAGCGCATGCATTAAAACCTGATTTAATTTTAA
TGGATTTAGTGATGACGGATATGGACGGAGTAGAAGCGACGACGCAAATTAAGAAAGATTTACCTAAAATCAAAGTCGTG
ATGCTTACAAGTTATATTGAGGATAAAGAAGTCTACCGTGCATTAGATGCAGGTGTAGACAGTTATATTTTAAAAACAAC
AAGCGCCAGCGACATTGCTGAAGCCATTCGCAAAACATCTAAAGGGGAATCTGTCTTTGAAGCAGAAGTACTCGTTAAAA
TGAGAAATCGTATGCGCCAACGTGCAGAACTTTACGAGCTTTTAACCGAAAGAGAAATGGAAATTTTATTATTGATTTCA
AAAGGCTATTCTAATCAAGAAATTGCGAGCGCTTCACATATAACGATTAAAACCGTTAAAACACATGTTAGTAACATTTT
AAGTAAACTTGAAGTTCAAGACCGTACACAAGCTGTGATATATGCTTTCCAACATGGGCTCATAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383

Multiple sequence alignment