Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   DWB97_RS04395 Genome accession   NZ_CP031274
Coordinates   893577..894620 (+) Length   347 a.a.
NCBI ID   WP_037575781.1    Uniprot ID   A0AAE5T1E1
Organism   Staphylococcus chromogenes strain 17A     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 888577..899620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB97_RS04370 (DWB97_04380) - 889515..890243 (+) 729 WP_145400673.1 type 1 glutamine amidotransferase -
  DWB97_RS04375 (DWB97_04385) - 890281..891291 (-) 1011 WP_105965742.1 aromatic acid exporter family protein -
  DWB97_RS04380 (DWB97_04390) map 891623..892381 (+) 759 WP_037575776.1 type I methionyl aminopeptidase -
  DWB97_RS04385 (DWB97_04395) - 892477..892866 (+) 390 WP_145400674.1 hypothetical protein -
  DWB97_RS04390 (DWB97_04400) liaF 892879..893580 (+) 702 WP_037575779.1 cell wall-active antibiotics response protein LiaF -
  DWB97_RS04395 (DWB97_04405) vraS 893577..894620 (+) 1044 WP_037575781.1 sensor histidine kinase Regulator
  DWB97_RS04400 (DWB97_04410) vraR 894610..895239 (+) 630 WP_037575783.1 response regulator transcription factor Regulator
  DWB97_RS04405 (DWB97_04415) - 895443..896015 (-) 573 WP_107359303.1 carbonic anhydrase -
  DWB97_RS04410 (DWB97_04420) - 896058..897326 (-) 1269 WP_145400675.1 YihY/virulence factor BrkB family protein -
  DWB97_RS04415 (DWB97_04425) - 897452..897727 (-) 276 WP_037575789.1 YtxH domain-containing protein -
  DWB97_RS04420 (DWB97_04430) - 897732..898190 (-) 459 WP_145400676.1 low molecular weight protein-tyrosine-phosphatase -
  DWB97_RS04425 (DWB97_04435) - 898323..898532 (+) 210 WP_037575795.1 DUF1128 domain-containing protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39847.71 Da        Isoelectric Point: 4.8537

>NTDB_id=305316 DWB97_RS04395 WP_037575781.1 893577..894620(+) (vraS) [Staphylococcus chromogenes strain 17A]
MNQYVRSIGSMLILVYSLFTAFFFIDNVFTNIIFFQGMFYTQIFGVPVFLFLNLIAIFLCIIVGSVLAYKNNQQNDWLKA
QIERSIEGETVGVNDQQIELYHETLELYEALVPLNQELHRMRIKTQNLTNESYNMNDSKVQKIIEDERHRLARELHDSVS
QQLFAASMMLSAIKETPLEPPLSQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDRSLGEGIQSLVSDLQRKVPLNVVQDI
GEFDVPKGMEDHLFRITQEAISNTLRHSKGTEVTVELLQRDDYILLRIQDDGIGFNVDDKMEQSYGLKNMRERAMEIGAT
FHIVSLPDSGTRIEVKAPLDKEGHNDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=305316 DWB97_RS04395 WP_037575781.1 893577..894620(+) (vraS) [Staphylococcus chromogenes strain 17A]
ATGAATCAATATGTACGATCAATCGGTTCAATGCTGATTTTAGTGTATAGTCTCTTTACCGCTTTTTTCTTTATTGATAA
TGTCTTCACAAATATCATCTTTTTTCAAGGAATGTTTTACACACAAATTTTTGGAGTTCCTGTTTTCTTGTTTTTAAATT
TAATAGCCATTTTTTTATGTATAATCGTTGGGAGTGTGCTCGCTTATAAAAATAACCAACAAAATGATTGGTTGAAAGCG
CAAATTGAACGCTCAATTGAAGGTGAGACGGTAGGCGTAAATGACCAACAAATTGAACTTTATCACGAAACATTAGAATT
ATATGAAGCACTTGTGCCGCTTAATCAAGAACTTCACCGTATGCGCATTAAAACACAAAATTTAACGAACGAATCGTATA
ACATGAATGATTCAAAAGTTCAGAAAATCATTGAAGATGAGCGGCACCGGTTGGCGCGTGAATTGCATGATAGTGTCTCT
CAACAGCTATTTGCGGCAAGTATGATGTTATCAGCAATAAAGGAAACACCACTTGAGCCTCCACTGAGCCAACAAATACC
CACTTTAGAGAAAATGGTACAGGATTCGCAATTAGAAATGCGCGCATTACTTTTGCATCTGAGACCGATTGGCTTAAAAG
ATCGTTCTTTAGGTGAAGGGATACAGTCTTTGGTATCAGATTTACAACGTAAAGTGCCATTAAATGTAGTTCAAGATATT
GGGGAATTTGACGTTCCCAAAGGGATGGAAGATCACCTTTTCAGAATTACACAAGAGGCAATTTCAAATACCCTGCGTCA
TTCTAAAGGCACAGAGGTGACTGTTGAATTACTTCAGCGTGACGATTACATACTCCTACGTATACAAGATGACGGTATAG
GGTTTAACGTTGATGATAAGATGGAACAAAGTTATGGTTTGAAAAATATGCGTGAACGTGCGATGGAAATCGGTGCGACG
TTCCATATCGTATCGTTACCAGATTCAGGTACACGTATTGAAGTGAAAGCACCGTTAGATAAGGAGGGGCATAATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

81.268

100

0.813


Multiple sequence alignment