Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DWB97_RS04080 Genome accession   NZ_CP031274
Coordinates   829844..830566 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 17A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 824844..835566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB97_RS04060 (DWB97_04070) - 825376..826023 (+) 648 WP_037575663.1 redox-sensing transcriptional repressor Rex -
  DWB97_RS04065 (DWB97_04075) - 826195..827277 (+) 1083 WP_119513305.1 YeeE/YedE family protein -
  DWB97_RS04070 (DWB97_04080) - 827299..827523 (+) 225 WP_037575670.1 sulfurtransferase TusA family protein -
  DWB97_RS04075 (DWB97_04085) - 827864..829348 (+) 1485 WP_145400634.1 sucrose-6-phosphate hydrolase -
  DWB97_RS04080 (DWB97_04090) agrA 829844..830566 (-) 723 WP_037575675.1 quorum-sensing response regulator AgrA Regulator
  DWB97_RS11930 - 830581..831375 (-) 795 WP_228518221.1 sensor histidine kinase -
  DWB97_RS04090 (DWB97_04100) - 831911..832045 (-) 135 WP_105986645.1 cyclic lactone autoinducer peptide AgrD -
  DWB97_RS04095 (DWB97_04105) - 832048..832611 (-) 564 WP_037575678.1 accessory gene regulator AgrB -
  DWB97_RS04100 (DWB97_04110) - 833259..834056 (-) 798 WP_107364120.1 carbon-nitrogen family hydrolase -
  DWB97_RS12040 (DWB97_04115) - 834236..835381 (+) 1146 WP_145400635.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=305315 DWB97_RS04080 WP_037575675.1 829844..830566(-) (agrA) [Staphylococcus chromogenes strain 17A]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=305315 DWB97_RS04080 WP_037575675.1 829844..830566(-) (agrA) [Staphylococcus chromogenes strain 17A]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTGCTCGAAGCTTCTAAAAACATGAATGATATCG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATCTAACATTTGTATACAAGTTGGCGGCCATGGATTT
TATTTTTAAAGATGACGTCGATGAGTTACGCACGCGAGTCATTGATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACGAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAGTCACATCGTCTTATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGATGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813

Multiple sequence alignment