Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DWB91_RS07390 Genome accession   NZ_CP031266
Coordinates   1519368..1520249 (-) Length   293 a.a.
NCBI ID   WP_060550902.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain 12B     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1514368..1525249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWB91_RS07375 (DWB91_07400) xerC 1514876..1515766 (-) 891 WP_060550905.1 tyrosine recombinase XerC -
  DWB91_RS07380 (DWB91_07405) trmFO 1515887..1517191 (-) 1305 WP_145052000.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DWB91_RS07385 (DWB91_07410) topA 1517204..1519273 (-) 2070 WP_060550903.1 type I DNA topoisomerase -
  DWB91_RS07390 (DWB91_07415) dprA 1519368..1520249 (-) 882 WP_060550902.1 DNA-processing protein DprA Machinery gene
  DWB91_RS07395 (DWB91_07420) sucD 1520462..1521370 (-) 909 WP_060550901.1 succinate--CoA ligase subunit alpha -
  DWB91_RS07400 (DWB91_07425) sucC 1521392..1522558 (-) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  DWB91_RS07405 (DWB91_07430) - 1522771..1523040 (-) 270 WP_037564707.1 hypothetical protein -
  DWB91_RS07410 (DWB91_07435) - 1523127..1523903 (-) 777 WP_145052003.1 ribonuclease HII -
  DWB91_RS07415 (DWB91_07440) ylqF 1523893..1524774 (-) 882 WP_060552473.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33179.64 Da        Isoelectric Point: 9.5876

>NTDB_id=305267 DWB91_RS07390 WP_060550902.1 1519368..1520249(-) (dprA) [Staphylococcus agnetis strain 12B]
MLLENLIKLRYAGFTTQQLYRIFKRPIDVLSSDITPILHQYITHQSPSSLRLKLQTFHTLSASDILQQLRHDNIFPITIL
DEQFPTLLKEIYQPPLLLFCKGDLTHVTISKYKLGIVGARDCTLYSEKAVNYLLHEMKHAPLIIVSGLAKGTDALAHDYA
LKYSLPTIGVLGFGHHYHYPSVTKSLRHTIEMNRRGLTISEYPPMTPPAKFRFPERNRIISGLSHGVLVTEAKEKSGALI
TLDQALEHNRNVYVLPGDMFNKHTKGNMMRIKEGAEIVLSAADILKDLNTSIQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=305267 DWB91_RS07390 WP_060550902.1 1519368..1520249(-) (dprA) [Staphylococcus agnetis strain 12B]
GTGCTATTAGAAAATTTAATCAAATTGCGATATGCAGGTTTCACGACACAGCAACTTTATCGCATTTTTAAGCGACCTAT
TGACGTTTTGTCATCAGACATCACACCTATTTTGCATCAATATATTACGCACCAAAGTCCTTCTTCGTTACGATTAAAAC
TCCAAACATTTCATACATTAAGTGCTTCTGATATTTTACAACAACTTCGTCACGACAACATTTTTCCAATCACCATATTA
GATGAGCAATTCCCAACACTTTTAAAAGAAATTTACCAACCGCCACTTTTATTATTTTGTAAAGGCGACCTGACACACGT
TACCATTTCTAAGTACAAACTCGGCATAGTGGGTGCACGTGACTGTACGCTTTATAGCGAAAAAGCTGTCAATTATCTTC
TTCATGAGATGAAACACGCACCTTTAATCATTGTATCTGGTCTTGCGAAAGGAACAGATGCACTTGCGCATGATTATGCG
CTCAAATATTCATTACCTACAATAGGTGTGTTAGGGTTTGGGCATCATTATCATTATCCTTCAGTAACAAAATCACTTCG
ACACACAATTGAAATGAACCGACGAGGTTTAACTATTAGTGAATATCCTCCTATGACGCCACCCGCAAAATTCCGTTTTC
CTGAACGTAATCGTATAATCAGTGGTCTGAGCCATGGCGTTCTAGTTACAGAAGCAAAAGAGAAAAGTGGTGCACTTATC
ACGTTAGATCAAGCATTAGAACATAATCGAAATGTGTATGTACTCCCTGGAGATATGTTTAATAAACACACAAAAGGTAA
TATGATGCGTATTAAGGAAGGTGCTGAAATTGTACTTTCAGCAGCAGATATTTTGAAAGATTTGAATACGTCAATTCAGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.228

97.27

0.498
  dprA Staphylococcus aureus N315

51.228

97.27

0.498
  dprA Streptococcus mutans UA159

36.149

100

0.365

Multiple sequence alignment