Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV445_RS00505 Genome accession   NZ_CP031255
Coordinates   95219..95548 (-) Length   109 a.a.
NCBI ID   WP_107855417.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 90219..100548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS00490 - 91208..92014 (+) 807 WP_049249399.1 cytochrome C assembly family protein -
  DV445_RS00495 pgaB 92422..94290 (+) 1869 WP_107855294.1 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB -
  DV445_RS00500 - 94359..95135 (-) 777 WP_107855292.1 ferredoxin--NADP reductase -
  DV445_RS00505 comE 95219..95548 (-) 330 WP_107855417.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11113.00 Da        Isoelectric Point: 10.5237

>NTDB_id=305113 DV445_RS00505 WP_107855417.1 95219..95548(-) (comE) [Neisseria elongata strain M15910]
MKKALFGLLSYAVTALALAAVNINTATVEELKALPGIGPAKAQAIVDYRKENGHFKSVEDLKKVKGIGEGIFGKLKDEAT
VGTAAPAKTAKPAAAKPAAQPAAGKNTAK

Nucleotide


Download         Length: 330 bp        

>NTDB_id=305113 DV445_RS00505 WP_107855417.1 95219..95548(-) (comE) [Neisseria elongata strain M15910]
ATGAAAAAGGCTTTGTTTGGTTTGTTGTCTTATGCGGTTACGGCTTTGGCTTTGGCGGCCGTCAATATCAATACGGCCAC
GGTTGAGGAGTTGAAGGCTTTGCCCGGGATTGGTCCGGCAAAGGCTCAGGCCATTGTGGATTACCGCAAGGAAAACGGCC
ATTTCAAATCGGTGGAGGATTTGAAGAAGGTGAAGGGTATCGGTGAGGGTATCTTCGGTAAGTTGAAGGATGAGGCAACG
GTCGGTACTGCTGCGCCGGCTAAAACGGCCAAACCCGCAGCCGCGAAACCTGCTGCCCAACCCGCAGCAGGGAAAAATAC
GGCTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.259

74.312

0.44

Multiple sequence alignment