Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DV311_RS07220 Genome accession   NZ_CP031253
Coordinates   1315683..1317200 (+) Length   505 a.a.
NCBI ID   WP_114935570.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310683..1322200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS12530 - 1310696..1310929 (-) 234 WP_147280912.1 hypothetical protein -
  DV311_RS07205 - 1310945..1311628 (-) 684 WP_003709391.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  DV311_RS07210 parC 1311775..1314078 (+) 2304 WP_114935569.1 DNA topoisomerase IV subunit A -
  DV311_RS07215 - 1314098..1315690 (+) 1593 WP_162817137.1 ATP-binding protein -
  DV311_RS07220 pilR 1315683..1317200 (+) 1518 WP_114935570.1 sigma-54-dependent transcriptional regulator Regulator
  DV311_RS07225 - 1317304..1318056 (+) 753 WP_114935571.1 class I SAM-dependent methyltransferase -
  DV311_RS07235 - 1318801..1319007 (-) 207 WP_002212781.1 DUF2788 domain-containing protein -
  DV311_RS07240 metZ 1319093..1320262 (-) 1170 WP_114935572.1 O-succinylhomoserine sulfhydrylase -
  DV311_RS07245 - 1320407..1321177 (-) 771 WP_114935573.1 hypothetical protein -
  DV311_RS07250 - 1321277..1321528 (+) 252 WP_114935574.1 NGO1151 family protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 56234.28 Da        Isoelectric Point: 6.1539

>NTDB_id=305063 DV311_RS07220 WP_114935570.1 1315683..1317200(+) (pilR) [Neisseria lactamica strain M17106]
MTELQHPVLVVDDETDILDLMEMTLMKMGLRVHTASGVAEAKNKLDSQRYSLVLTDMRMPDGSGLEVVQHINSRLLDTPV
AVITAFGNADQAQEALRCGAFDYIQKPITLARLRSLVKSAISVSENQNKIPEPPVRTASPVSSPMPSEAPEPANAIPAAP
PVSAALPYAEPDMPRLLGSSPQMVEIRHLIRRLAPGKVPVYISGESGTGKEQAARTIHELSDRADKPFVAVNCGAIPENL
MESEFFGYRKGSFTGADKDHNGFFRHADGGTLFLDEVADLPLSMQVKLLRAIQEKAVRRIGDTAEQPVDVRIVCATHKNL
EALVESGAFRQDLYYRLNVVSLNMPSLREMREDLKLLIPYLLYKHSRNNRSYTLSPAAQQMLLNYSYPGNFRELENILER
AVALCVGHTVQIDDLQIQDVRHKPVRTETAERAADTLPSETAAAPSRVLPFDPDTMQIQDYLDQIERDIIEQTLKQTEGN
RTQAAKRLGISFRSMRYRMERLNIG

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=305063 DV311_RS07220 WP_114935570.1 1315683..1317200(+) (pilR) [Neisseria lactamica strain M17106]
ATGACTGAACTGCAACATCCCGTCCTCGTCGTCGATGACGAAACCGACATTCTCGACCTGATGGAAATGACCCTGATGAA
AATGGGCTTGCGCGTCCATACCGCGTCAGGCGTTGCCGAAGCCAAAAACAAGCTCGACAGCCAACGCTATTCGCTCGTCC
TGACCGATATGCGTATGCCCGACGGCTCGGGGCTTGAAGTCGTCCAACACATCAACAGCCGCCTGCTCGATACGCCGGTT
GCCGTCATCACCGCCTTCGGCAATGCCGATCAGGCGCAAGAGGCCCTGCGTTGCGGCGCGTTCGACTACATCCAAAAACC
CATCACCCTCGCCCGGCTGCGTTCCCTCGTCAAATCGGCAATTTCCGTTTCCGAAAACCAAAACAAAATCCCCGAACCGC
CCGTTCGGACGGCATCCCCCGTTTCTTCCCCAATGCCGTCTGAAGCCCCGGAACCTGCAAACGCGATACCGGCGGCACCG
CCCGTTTCCGCCGCCCTTCCCTATGCGGAACCCGATATGCCCCGCCTGCTCGGCAGCTCTCCGCAGATGGTCGAAATCCG
CCACCTCATCCGCCGCCTCGCGCCTGGCAAAGTACCCGTCTATATTTCCGGCGAATCCGGTACAGGTAAGGAACAGGCGG
CGCGCACCATACACGAACTGTCCGACCGCGCGGACAAACCCTTTGTCGCCGTCAACTGCGGCGCGATTCCCGAAAACCTG
ATGGAAAGCGAATTTTTCGGCTACCGCAAAGGCAGTTTTACCGGCGCCGACAAAGACCACAACGGCTTCTTCCGCCACGC
CGACGGCGGCACTTTGTTTTTGGACGAAGTCGCCGACCTGCCCCTTTCCATGCAGGTCAAACTCTTGCGCGCGATTCAAG
AAAAAGCCGTGCGCCGCATCGGCGATACCGCCGAGCAGCCCGTCGATGTCCGCATCGTCTGCGCCACCCACAAAAACCTC
GAAGCCCTTGTCGAAAGCGGCGCATTCCGCCAAGACCTGTATTACCGCCTCAATGTCGTCAGCCTCAATATGCCGTCCCT
GCGTGAAATGCGCGAAGATTTGAAGCTGCTCATCCCCTACCTCCTGTACAAACACAGCCGCAACAACCGGTCTTACACAC
TCTCCCCCGCCGCGCAACAGATGCTCCTGAATTACAGTTATCCGGGCAATTTCCGCGAACTCGAAAACATCCTCGAACGC
GCCGTCGCCCTGTGCGTCGGACATACCGTGCAAATCGACGACCTGCAAATCCAAGATGTGCGCCACAAGCCCGTCCGGAC
GGAAACCGCCGAGCGCGCCGCCGATACCTTGCCGTCTGAAACAGCCGCCGCACCGTCCCGCGTCCTGCCGTTCGACCCCG
ATACCATGCAGATACAGGACTATCTCGACCAAATCGAACGCGACATCATCGAACAAACCCTCAAACAAACCGAAGGCAAC
CGCACGCAGGCCGCCAAACGCTTGGGCATCAGCTTCCGTTCCATGCGCTACCGTATGGAACGTCTCAACATCGGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(462-501)

Sigma-54 interaction domain (Sigma54_activat)

(176-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

48.406

99.406

0.481
  pilR Acinetobacter baumannii strain A118

41.142

100

0.414

Multiple sequence alignment