Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DV311_RS02370 Genome accession   NZ_CP031253
Coordinates   417437..418243 (-) Length   268 a.a.
NCBI ID   WP_013449289.1    Uniprot ID   A0A378VKF1
Organism   Neisseria lactamica strain M17106     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 412437..423243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS02355 - 413172..413732 (+) 561 WP_230455331.1 uracil-DNA glycosylase family protein -
  DV311_RS02360 trpB 413814..415016 (+) 1203 WP_003713791.1 tryptophan synthase subunit beta -
  DV311_RS02365 comA 415148..417367 (+) 2220 WP_162817101.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV311_RS02370 comL 417437..418243 (-) 807 WP_013449289.1 outer membrane protein assembly factor BamD Machinery gene
  DV311_RS02375 rluD 418242..419366 (+) 1125 WP_114935087.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV311_RS02380 - 419519..420466 (-) 948 WP_114935088.1 bile acid:sodium symporter family protein -
  DV311_RS02390 - 420791..421279 (+) 489 WP_107862577.1 Imm26 family immunity protein -
  DV311_RS02395 pgeF 421542..422321 (+) 780 WP_114935089.1 peptidoglycan editing factor PgeF -
  DV311_RS02400 lptE 422373..422852 (+) 480 WP_002217671.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30618.75 Da        Isoelectric Point: 8.6962

>NTDB_id=305046 DV311_RS02370 WP_013449289.1 417437..418243(-) (comL) [Neisseria lactamica strain M17106]
MKKILLMVSLSLALCACASSQGTVDKDTQTTQGWGVEKLYAEAQDELGGGNYTRAVKLYEILGSRFPTGRYAQQALLDTA
YAYYKDDEKDKALAAIDRFRNLYPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVRRFPD
SKYAADASARMIKLVDALGGNEMAVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRR
VLETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 807 bp        

>NTDB_id=305046 DV311_RS02370 WP_013449289.1 417437..418243(-) (comL) [Neisseria lactamica strain M17106]
ATGAAAAAAATTCTTTTAATGGTTTCGTTAAGTTTGGCGCTGTGCGCCTGTGCAAGCAGCCAAGGCACGGTCGACAAAGA
CACCCAAACGACCCAAGGCTGGGGCGTGGAAAAACTCTATGCCGAAGCGCAAGACGAGTTGGGCGGCGGCAATTATACGC
GCGCCGTCAAATTATACGAAATATTGGGCTCACGCTTCCCGACCGGCCGCTACGCGCAACAGGCGTTGCTGGATACGGCC
TACGCCTATTATAAAGATGATGAGAAGGATAAGGCGCTGGCGGCAATCGACCGCTTCCGCAACCTCTACCCGCAGCATCC
GAATATGGATTACGCGCTGTACCTGCGCGGTTTGGTGCTGTTCAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGC
AAGACTGGTCCGACCGCGATCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCGGCGTTTCCCCGAC
AGCAAATACGCCGCCGATGCGTCCGCGCGTATGATCAAACTGGTCGATGCCTTGGGCGGCAATGAAATGGCGGTTGCCCG
TTATTATATGAAACGCGGCGCATACATCGCCGCCGCCAACCGTGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGCT
ATGTCGAAGAATCGCTCGCCATCTTGGAACTCGCCTACCAAAAACTCGGCAAACCGCAGCTTGCCGCCGACACGCGCCGC
GTGTTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTG
GCATTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(37-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378VKF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

88.806

100

0.888
  comL Neisseria meningitidis MC58

88.06

100

0.881

Multiple sequence alignment