Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DV311_RS02365 Genome accession   NZ_CP031253
Coordinates   415148..417367 (+) Length   739 a.a.
NCBI ID   WP_162817101.1    Uniprot ID   -
Organism   Neisseria lactamica strain M17106     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 410148..422367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV311_RS02335 - 410881..411336 (-) 456 WP_003713800.1 hypothetical protein -
  DV311_RS02340 - 411447..412016 (-) 570 WP_003713797.1 GTP pyrophosphokinase -
  DV311_RS02345 rsmA 412032..412811 (-) 780 WP_003713795.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  DV311_RS02355 - 413172..413732 (+) 561 WP_230455331.1 uracil-DNA glycosylase family protein -
  DV311_RS02360 trpB 413814..415016 (+) 1203 WP_003713791.1 tryptophan synthase subunit beta -
  DV311_RS02365 comA 415148..417367 (+) 2220 WP_162817101.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DV311_RS02370 comL 417437..418243 (-) 807 WP_013449289.1 outer membrane protein assembly factor BamD Machinery gene
  DV311_RS02375 rluD 418242..419366 (+) 1125 WP_114935087.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DV311_RS02380 - 419519..420466 (-) 948 WP_114935088.1 bile acid:sodium symporter family protein -
  DV311_RS02390 - 420791..421279 (+) 489 WP_107862577.1 Imm26 family immunity protein -
  DV311_RS02395 pgeF 421542..422321 (+) 780 WP_114935089.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80032.66 Da        Isoelectric Point: 10.0108

>NTDB_id=305045 DV311_RS02365 WP_162817101.1 415148..417367(+) (comA) [Neisseria lactamica strain M17106]
MFRRCFLPCWVVGVAASFALPVVPHWLFWLAAFAVFAVFARRFAFAGLMLCVLAGAAYGVFRTEAALSSQWRAEAVSGVP
LTVEVADMPRSDGRRVQFAAKAEDDGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
GTVGADRVLLDDGSGWGIAVWRSRISRNWRQADADGGLSDGIGLMRALSVGEQSALRPELWQAFRPLGLTHLVSISGLHV
TMVAVMFAWLAKRLLACSPRLPTRPRVWVLAAGCAGALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLPAWATWWQALA
AVLLFDPSAVLGVGTWLSFGLVAALIWACSGRLHEGKQQTALRGQWAASVLSLVLLGYLFASLPLVSPLVNAVAIPWFSW
VLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVASAPLPLLVLAVCAALLLLLPRGLGLRPWAVLLLAG
FVFYRPPGVPENEAAVTVWDAGQGLSVSVQTANHHLLFDTGTASAAQTGIVPSLNAAGVRRLDKLVLSHHDSDHDGGFQA
VGKIPNGGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLRPSERKNIDDNGKSCVLRVVAGGAALLVTGDLDTKGEAELVK
KYGSNLYSQVLVLGHHGSNTSSSGVFLNTVSPEYAVASSGYANAYKHPTQVVQNRVRAHGIKLLRTDLSGALQFGLGRGG
VKAQRLRGYKFYWQKKPFE

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=305045 DV311_RS02365 WP_162817101.1 415148..417367(+) (comA) [Neisseria lactamica strain M17106]
GTGTTCCGTCGTTGTTTTTTGCCGTGTTGGGTCGTCGGCGTGGCGGCTTCGTTTGCGCTGCCGGTCGTGCCGCATTGGCT
GTTTTGGCTGGCGGCTTTTGCGGTTTTTGCTGTGTTTGCAAGGCGTTTTGCGTTTGCCGGTCTGATGCTGTGCGTGTTGG
CGGGCGCGGCTTACGGCGTATTCAGAACGGAAGCGGCACTGTCTTCGCAATGGCGGGCGGAGGCGGTTTCAGGCGTGCCG
TTGACGGTGGAAGTGGCGGATATGCCGAGGTCGGACGGGCGGCGCGTGCAGTTTGCTGCAAAGGCGGAGGATGACGGTGG
TCGGACGTTTGATTTGCTGCTGTCGGACTACAAACGGCGCGAATGGGCGGTCGGGAGCAGATGGCGGATAACGGCACGTG
TGCACCCCGTCGTCGGGGAGTTGAACCTGCGCGGTTTGAACCGTGAGGCGTGGGCATTATCCAACGGGATAGGCGGTGCG
GGGACGGTCGGTGCGGACAGGGTTTTGCTGGATGACGGAAGCGGTTGGGGGATTGCGGTTTGGCGCAGCCGCATCAGCCG
TAATTGGCGGCAGGCGGATGCGGACGGCGGGCTTTCAGACGGCATCGGGCTGATGCGCGCGTTGAGTGTGGGCGAACAGT
CGGCATTGCGCCCCGAATTGTGGCAGGCGTTCCGACCGTTGGGGCTGACGCATCTGGTCAGTATTTCGGGTTTGCACGTT
ACGATGGTGGCGGTGATGTTTGCGTGGCTGGCGAAGCGGCTGCTTGCCTGTTCCCCGCGCCTTCCCACCCGGCCGCGCGT
GTGGGTTTTGGCGGCGGGGTGTGCAGGCGCGCTGTTTTACGCGCTGCTTGCCGGTTTTTCCGTGCCGACGCAGCGCAGTG
TTTTGATGTTGGCGGCGTTTGCGTGGGCGTGGCGCAGGGGAAGGCTGCCGGCGTGGGCGACGTGGTGGCAGGCGTTGGCG
GCGGTGCTGCTGTTCGACCCGTCGGCAGTTTTGGGTGTGGGAACTTGGCTGTCTTTCGGTTTGGTGGCGGCCCTGATATG
GGCGTGTTCGGGGCGTTTGCACGAGGGGAAACAGCAAACCGCTTTGCGCGGACAGTGGGCGGCTTCGGTGTTGTCGTTGG
TTTTGCTCGGTTATCTGTTTGCTTCGCTGCCTTTGGTCAGCCCTTTGGTCAATGCGGTGGCGATTCCGTGGTTTTCTTGG
GTATTGACGCCGCTGGCGTTGCTGGGTTCGGTCGTGCCGTTTGCGCCTTTGCAACAGTTGGGGGCATTTTTGGCGGAATA
CACTTTGCGGTTTTTGGTGTGGCTTGCCGATGTGTCGCCCGAGTTTGCCGTTGCTTCCGCACCTTTGCCGCTGTTGGTGT
TGGCGGTGTGTGCCGCTTTGCTGTTGCTGTTGCCGCGCGGCTTGGGTTTGCGTCCGTGGGCGGTGTTGCTGTTGGCAGGG
TTTGTGTTTTACCGTCCGCCCGGCGTGCCGGAAAATGAGGCTGCGGTTACGGTTTGGGATGCGGGGCAGGGTTTGTCGGT
GTCGGTTCAGACGGCAAATCATCATCTTTTGTTTGACACCGGAACTGCATCGGCGGCACAGACGGGGATTGTGCCGAGTT
TGAATGCGGCGGGTGTCCGCCGTTTGGACAAGCTGGTTTTGTCGCATCACGACAGCGACCACGACGGCGGTTTTCAGGCA
GTCGGCAAGATACCGAACGGCGGGATTTATGCCGGGCAGCCGGAATTTTATGAGGGGGCGCGGCATTGTGCGGAACAGCG
TTGGCAATGGGACGGCGTAGATTTCGAGTTTTTGAGGCCGTCTGAACGCAAAAACATCGATGATAATGGGAAAAGTTGTG
TTTTGCGTGTTGTGGCTGGCGGTGCGGCTTTGCTGGTAACCGGCGATTTGGATACGAAAGGCGAGGCGGAGTTGGTTAAA
AAATACGGCTCAAACCTGTACAGCCAGGTTTTGGTTTTGGGGCATCACGGCAGCAATACGTCCTCGTCGGGCGTGTTCCT
CAATACCGTCTCGCCCGAATATGCCGTTGCTTCAAGCGGTTATGCCAACGCCTACAAACATCCGACCCAAGTGGTGCAAA
ACCGTGTCCGCGCACACGGCATCAAACTGCTGCGTACCGATTTGTCGGGCGCGCTGCAATTCGGCTTGGGACGCGGCGGC
GTGAAGGCCCAACGTTTGAGAGGGTATAAATTCTATTGGCAGAAAAAACCGTTTGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-676)

Competence protein (Competence)

(208-465)

Domain of unknown function (DUF4131) (DUF4131)

(7-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

94.317

100

0.943

Multiple sequence alignment