Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV446_RS09050 Genome accession   NZ_CP031252
Coordinates   1780095..1780424 (+) Length   109 a.a.
NCBI ID   WP_074898583.1    Uniprot ID   A0A378TWJ7
Organism   Neisseria elongata strain M15911     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1775095..1785424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS09050 comE 1780095..1780424 (+) 330 WP_074898583.1 ComEA family DNA-binding protein Machinery gene
  DV446_RS09055 - 1780508..1781284 (+) 777 WP_074895653.1 ferredoxin--NADP reductase -
  DV446_RS09060 pgaB 1781353..1783203 (-) 1851 WP_240317852.1 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB -
  DV446_RS09065 - 1783630..1784436 (-) 807 WP_074895648.1 cytochrome C assembly family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11111.03 Da        Isoelectric Point: 10.5237

>NTDB_id=305031 DV446_RS09050 WP_074898583.1 1780095..1780424(+) (comE) [Neisseria elongata strain M15911]
MKKALFGLLSYAVTALALAAVNINTATVEELKALPGIGPAKAQAIVDYRKENGHFKSVEDLKKVKGIGEGIFGKLKDEAT
VGTAAPAKTAKPAAVKPAAQPAAGKNAAK

Nucleotide


Download         Length: 330 bp        

>NTDB_id=305031 DV446_RS09050 WP_074898583.1 1780095..1780424(+) (comE) [Neisseria elongata strain M15911]
ATGAAAAAGGCTTTGTTCGGTTTGTTGTCTTATGCGGTTACGGCTTTGGCTTTGGCGGCCGTCAATATCAATACGGCCAC
GGTTGAGGAGTTGAAGGCTTTGCCCGGGATCGGTCCGGCAAAGGCTCAGGCAATTGTGGATTACCGCAAGGAAAACGGTC
ATTTCAAATCGGTGGAGGATTTGAAGAAGGTGAAGGGTATCGGTGAGGGTATCTTCGGTAAGTTGAAGGATGAGGCAACG
GTCGGTACTGCTGCGCCGGCTAAAACGGCCAAACCCGCAGCAGTGAAACCTGCCGCTCAACCCGCAGCAGGGAAAAATGC
GGCTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378TWJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.259

74.312

0.44

Multiple sequence alignment