Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DV114_RS08330 Genome accession   NZ_CP031251
Coordinates   1739607..1740149 (-) Length   180 a.a.
NCBI ID   WP_107697145.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1734607..1745149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS08315 aroB 1735709..1736788 (-) 1080 WP_101756139.1 3-dehydroquinate synthase -
  DV114_RS08320 - 1736811..1737323 (-) 513 WP_039862528.1 shikimate kinase -
  DV114_RS08325 pilQ 1737455..1739586 (-) 2132 Protein_1572 type IV pilus secretin PilQ -
  DV114_RS08330 pilP 1739607..1740149 (-) 543 WP_107697145.1 pilus assembly protein PilP Machinery gene
  DV114_RS08335 pilO 1740165..1740836 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  DV114_RS08340 pilN 1740836..1741459 (-) 624 WP_114926369.1 PilN domain-containing protein Machinery gene
  DV114_RS08345 pilM 1741464..1742555 (-) 1092 WP_070825873.1 type IV pilus assembly protein PilM -
  DV114_RS08350 - 1742708..1745104 (+) 2397 WP_114926370.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20033.53 Da        Isoelectric Point: 5.3039

>NTDB_id=304994 DV114_RS08330 WP_107697145.1 1739607..1740149(-) (pilP) [Neisseria subflava strain M18660]
MKKIILLLSLLPLAACTQSYEDLTQWMTQTRQEAKSKIIPFEEPTVTLPKPYSPPNFKGMNAFDSRRLDTAPKGGNAPDV
NRPKETLEAFSLENMAFVGTLQSGGKVSGFIKVNDHVYTVYPGNYIGQNYGRIQSITEDKIILTEQIEDSYGNWVYRKAE
LPLSSKEADSSNSSDSSNSN

Nucleotide


Download         Length: 543 bp        

>NTDB_id=304994 DV114_RS08330 WP_107697145.1 1739607..1740149(-) (pilP) [Neisseria subflava strain M18660]
ATGAAAAAAATCATCTTACTCTTAAGTCTTCTTCCCTTGGCAGCCTGTACGCAAAGCTATGAAGATTTGACTCAATGGAT
GACGCAAACCCGTCAGGAAGCAAAATCCAAGATTATTCCGTTTGAAGAGCCGACGGTTACATTGCCTAAGCCGTATAGCC
CGCCGAACTTTAAAGGCATGAATGCGTTTGATTCACGCCGTTTGGACACTGCTCCTAAAGGTGGCAATGCGCCGGATGTG
AACCGTCCGAAAGAAACATTGGAAGCCTTCAGTTTGGAAAATATGGCCTTTGTCGGAACGCTGCAAAGCGGTGGCAAAGT
TTCCGGATTTATTAAGGTCAACGACCATGTTTATACCGTTTATCCCGGAAACTACATCGGTCAGAATTACGGCAGAATCC
AAAGTATTACCGAAGATAAAATTATCTTGACCGAGCAAATTGAAGACAGCTACGGCAACTGGGTGTACCGGAAGGCCGAA
TTGCCATTGAGCAGTAAAGAGGCGGATTCTTCCAATAGCTCAGATAGTTCGAATTCAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

61.176

94.444

0.578

Multiple sequence alignment