Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DV114_RS08340 Genome accession   NZ_CP031251
Coordinates   1740836..1741459 (-) Length   207 a.a.
NCBI ID   WP_114926369.1    Uniprot ID   -
Organism   Neisseria subflava strain M18660     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735836..1746459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS08320 - 1736811..1737323 (-) 513 WP_039862528.1 shikimate kinase -
  DV114_RS08325 pilQ 1737455..1739586 (-) 2132 Protein_1572 type IV pilus secretin PilQ -
  DV114_RS08330 pilP 1739607..1740149 (-) 543 WP_107697145.1 pilus assembly protein PilP Machinery gene
  DV114_RS08335 pilO 1740165..1740836 (-) 672 WP_004520855.1 type 4a pilus biogenesis protein PilO -
  DV114_RS08340 pilN 1740836..1741459 (-) 624 WP_114926369.1 PilN domain-containing protein Machinery gene
  DV114_RS08345 pilM 1741464..1742555 (-) 1092 WP_070825873.1 type IV pilus assembly protein PilM -
  DV114_RS08350 - 1742708..1745104 (+) 2397 WP_114926370.1 penicillin-binding protein 1A -
  DV114_RS08355 - 1745165..1746001 (+) 837 WP_114926371.1 PHP domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23089.32 Da        Isoelectric Point: 4.8316

>NTDB_id=304995 DV114_RS08340 WP_114926369.1 1740836..1741459(-) (pilN) [Neisseria subflava strain M18660]
MIELTRINLLPYREEIKQRKQQQFKVLMLGAFAVGLGLAAATYLGIDSAIRNQEGRNNFLQTEIDRLDRELGEIDKLQQE
KEAFLAKKLKVEELQEKRYQAAYILDSLNALTPDNTYLTALEAESPTSYKISGHAISDNKIAVMMRSLPSTGIFLQPELL
SIKKVDNYQEFTLKSSINQVNTPAPAPTAQSSGEMAESVAEPAPEAQ

Nucleotide


Download         Length: 624 bp        

>NTDB_id=304995 DV114_RS08340 WP_114926369.1 1740836..1741459(-) (pilN) [Neisseria subflava strain M18660]
ATGATCGAATTAACCAGAATCAACCTTCTTCCGTATCGGGAAGAGATTAAACAGCGCAAGCAGCAGCAATTCAAAGTATT
GATGCTTGGCGCTTTTGCAGTGGGTTTGGGCTTGGCAGCCGCTACCTATCTCGGTATTGACAGCGCCATCCGCAATCAAG
AAGGCCGCAACAACTTCCTGCAAACCGAAATTGACAGACTTGATAGAGAATTAGGCGAAATCGATAAACTTCAGCAAGAA
AAAGAAGCCTTCTTGGCTAAAAAGCTGAAAGTTGAAGAGTTGCAGGAAAAACGCTATCAAGCGGCCTATATCCTTGATTC
TTTGAATGCGCTTACGCCCGATAATACTTATTTGACTGCGTTGGAAGCAGAAAGCCCGACCAGCTATAAAATCAGCGGTC
ATGCCATCAGCGACAATAAAATCGCCGTTATGATGCGCTCCCTGCCAAGTACAGGTATTTTCTTGCAGCCTGAATTGTTG
AGCATTAAAAAAGTAGATAACTACCAAGAATTTACTTTGAAATCTTCAATCAACCAAGTGAATACGCCGGCTCCTGCACC
GACTGCCCAAAGCAGCGGTGAAATGGCCGAATCTGTGGCAGAACCTGCTCCGGAGGCTCAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

56.061

95.652

0.536

Multiple sequence alignment