Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   DV114_RS00535 Genome accession   NZ_CP031251
Coordinates   97081..97968 (-) Length   295 a.a.
NCBI ID   WP_101756017.1    Uniprot ID   A0AAW6Y6A1
Organism   Neisseria subflava strain M18660     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 92081..102968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV114_RS00505 ftsZ 92345..93544 (+) 1200 WP_003682480.1 cell division protein FtsZ -
  DV114_RS00510 ispH 93664..94632 (-) 969 WP_101756021.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV114_RS00515 lspA 94646..95152 (-) 507 WP_167382871.1 signal peptidase II -
  DV114_RS00520 glyQ 95301..96200 (-) 900 WP_101756019.1 glycine--tRNA ligase subunit alpha -
  DV114_RS00525 yacG 96282..96464 (-) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  DV114_RS00530 coaE 96461..97081 (-) 621 WP_101756018.1 dephospho-CoA kinase -
  DV114_RS00535 pilD 97081..97968 (-) 888 WP_101756017.1 A24 family peptidase Machinery gene
  DV114_RS00540 pilG 97970..99211 (-) 1242 WP_101756016.1 type II secretion system F family protein Machinery gene
  DV114_RS00545 pilF 99291..100970 (-) 1680 WP_049331882.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32244.42 Da        Isoelectric Point: 8.3156

>NTDB_id=304965 DV114_RS00535 WP_101756017.1 97081..97968(-) (pilD) [Neisseria subflava strain M18660]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CKSPVKLWQNIPILSYVFLGGKCHSCKTAIGIRYPLIELLTGVLFGIVAWQYGWSWANIGGFILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVLGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
IAALVGLVGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide


Download         Length: 888 bp        

>NTDB_id=304965 DV114_RS00535 WP_101756017.1 97081..97968(-) (pilD) [Neisseria subflava strain M18660]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTGGG
ATTGCTGATTGGCAGCTTTCTGAACGTTGTTATTTATCGCACGCCGATAATGATGGAACGCGAATGGACACAATTTTCCA
AAGAGCATTTGGGTATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGTAAACCGGATTCACGCTGCCCCAAA
TGCAAAAGCCCAGTCAAACTTTGGCAAAACATCCCCATCCTCAGCTATGTTTTCCTGGGCGGGAAATGCCACTCCTGCAA
AACCGCTATCGGCATACGCTATCCGCTGATTGAGCTGCTGACAGGTGTCTTATTCGGTATTGTCGCATGGCAATACGGCT
GGTCATGGGCAAATATTGGCGGATTCATTCTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACTCAATAT
TTACCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAATGATACATTCGTACCCCTGCATTC
AGCCGTTTTAGGCGCAATCGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCGCTCGGTGCATGGCTGGGCGTAGGTATCTTGCCTGTTCTGATCTTC
ATAGCTGCCTTGGTCGGACTGGTGGGCGCACTCATTGCCCGCGTCGGCAAAGGCCAATATTTTGCTTTTGGTCCCAGCCT
TGCTGTGGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(143-249)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

70.318

95.932

0.675
  pilD Vibrio campbellii strain DS40M4

44

93.22

0.41
  pilD Vibrio cholerae strain A1552

46.154

88.136

0.407
  pilD Acinetobacter baumannii D1279779

45.418

85.085

0.386
  pilD Acinetobacter nosocomialis M2

45.418

85.085

0.386

Multiple sequence alignment