Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV389_RS00790 Genome accession   NZ_CP031250
Coordinates   153364..153711 (-) Length   115 a.a.
NCBI ID   WP_162816708.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M21384     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148364..158711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV389_RS00770 (DV389_00770) bioB 148699..149697 (-) 999 WP_105894438.1 biotin synthase BioB -
  DV389_RS00775 (DV389_00775) thiQ 149810..150457 (-) 648 WP_105876659.1 thiamine ABC transporter ATP-binding protein -
  DV389_RS00780 (DV389_00780) thiP 150441..152057 (-) 1617 WP_114892845.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DV389_RS00785 (DV389_00785) thiB 152062..153060 (-) 999 WP_114892846.1 thiamine ABC transporter substrate binding subunit -
  DV389_RS00790 (DV389_00790) comE1/comEA 153364..153711 (-) 348 WP_162816708.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV389_RS00795 (DV389_00795) ispH 153880..154824 (-) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV389_RS00800 (DV389_00800) lspA 154821..155336 (-) 516 WP_114892847.1 signal peptidase II -
  DV389_RS00805 (DV389_00805) - 155406..156965 (-) 1560 WP_114892848.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12509.41 Da        Isoelectric Point: 8.0084

>NTDB_id=304932 DV389_RS00790 WP_162816708.1 153364..153711(-) (comE1/comEA) [Haemophilus influenzae strain M21384]
MKLMKTLFTSFVLCGSLAAGSTFAEDKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGISKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304932 DV389_RS00790 WP_162816708.1 153364..153711(-) (comE1/comEA) [Haemophilus influenzae strain M21384]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAGACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTAGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

80.357

97.391

0.783
  comEA/comE1 Glaesserella parasuis strain SC1401

57.009

93.043

0.53
  comEA Vibrio campbellii strain DS40M4

37.5

97.391

0.365

Multiple sequence alignment