Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV378_RS01630 Genome accession   NZ_CP031249
Coordinates   338343..338690 (-) Length   115 a.a.
NCBI ID   WP_050948644.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M15895     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333343..343690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV378_RS01610 bioB 333732..334733 (-) 1002 WP_014550962.1 biotin synthase BioB -
  DV378_RS01615 thiQ 334846..335493 (-) 648 WP_005669738.1 thiamine ABC transporter ATP-binding protein -
  DV378_RS01620 thiP 335477..337093 (-) 1617 WP_005662922.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DV378_RS01625 thiB 337098..338096 (-) 999 WP_005647868.1 thiamine ABC transporter substrate binding subunit -
  DV378_RS01630 comE1/comEA 338343..338690 (-) 348 WP_050948644.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV378_RS01635 ispH 338859..339803 (-) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV378_RS01640 lspA 339800..340315 (-) 516 WP_050948645.1 signal peptidase II -
  DV378_RS01645 - 340385..341944 (-) 1560 WP_050948646.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12430.35 Da        Isoelectric Point: 9.0428

>NTDB_id=304897 DV378_RS01630 WP_050948644.1 338343..338690(-) (comE1/comEA) [Haemophilus influenzae strain M15895]
MKLMKTLFTSVVLCGSLAAGSTFAENKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304897 DV378_RS01630 WP_050948644.1 338343..338690(-) (comE1/comEA) [Haemophilus influenzae strain M15895]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAAACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

82.143

97.391

0.8
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.574
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment