Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   DV131_RS11670 Genome accession   NZ_CP031246
Coordinates   215733..216554 (-) Length   273 a.a.
NCBI ID   WP_000601680.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26368     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 210733..221554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS01190 - 211226..211543 (-) 318 WP_000615769.1 thioredoxin family protein -
  DV131_RS01195 - 211540..211839 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  DV131_RS12040 - 211933..212064 (+) 132 WP_001811306.1 hypothetical protein -
  DV131_RS11660 - 212089..212169 (-) 81 WP_223200463.1 hypothetical protein -
  DV131_RS01200 - 212176..212367 (-) 192 WP_000291826.1 cell wall-binding protein -
  DV131_RS01205 - 212528..213202 (-) 675 WP_050203226.1 hypothetical protein -
  DV131_RS01210 - 213208..213654 (-) 447 WP_114865817.1 LytTR family DNA-binding domain-containing protein -
  DV131_RS01215 - 213768..214271 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  DV131_RS01220 - 214268..214630 (-) 363 WP_050079643.1 DUF2200 family protein -
  DV131_RS11665 rcrQ 214695..215726 (-) 1032 WP_050209599.1 ATP-binding cassette domain-containing protein Regulator
  DV131_RS11670 rcrP 215733..216554 (-) 822 WP_000601680.1 ABC transporter permease Regulator
  DV131_RS01230 - 216571..217042 (-) 472 Protein_220 MarR family winged helix-turn-helix transcriptional regulator -
  DV131_RS01240 - 217166..217882 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DV131_RS01250 ply 218763..220178 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  DV131_RS01255 - 220189..220599 (-) 411 WP_000595758.1 hypothetical protein -
  DV131_RS01260 - 220592..221200 (-) 609 WP_000083614.1 hypothetical protein -

Sequence


Protein


Download         Length: 273 a.a.        Molecular weight: 30590.15 Da        Isoelectric Point: 5.9310

>NTDB_id=304739 DV131_RS11670 WP_000601680.1 215733..216554(-) (rcrP) [Streptococcus pneumoniae strain M26368]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVAVIINVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=304739 DV131_RS11670 WP_000601680.1 215733..216554(-) (rcrP) [Streptococcus pneumoniae strain M26368]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGCAGTGATTATCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

57.544

100

0.601


Multiple sequence alignment