Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DV131_RS11665 Genome accession   NZ_CP031246
Coordinates   214695..215726 (-) Length   343 a.a.
NCBI ID   WP_050209599.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26368     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 209695..220726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS01180 - 209790..210551 (-) 762 WP_001107772.1 SDR family NAD(P)-dependent oxidoreductase -
  DV131_RS01185 ytpR 210584..211210 (-) 627 WP_050103415.1 YtpR family tRNA-binding protein -
  DV131_RS01190 - 211226..211543 (-) 318 WP_000615769.1 thioredoxin family protein -
  DV131_RS01195 - 211540..211839 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  DV131_RS12040 - 211933..212064 (+) 132 WP_001811306.1 hypothetical protein -
  DV131_RS11660 - 212089..212169 (-) 81 WP_223200463.1 hypothetical protein -
  DV131_RS01200 - 212176..212367 (-) 192 WP_000291826.1 cell wall-binding protein -
  DV131_RS01205 - 212528..213202 (-) 675 WP_050203226.1 hypothetical protein -
  DV131_RS01210 - 213208..213654 (-) 447 WP_114865817.1 LytTR family DNA-binding domain-containing protein -
  DV131_RS01215 - 213768..214271 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  DV131_RS01220 - 214268..214630 (-) 363 WP_050079643.1 DUF2200 family protein -
  DV131_RS11665 rcrQ 214695..215726 (-) 1032 WP_050209599.1 ATP-binding cassette domain-containing protein Regulator
  DV131_RS11670 rcrP 215733..216554 (-) 822 WP_000601680.1 ABC transporter permease Regulator
  DV131_RS01230 - 216571..217042 (-) 472 Protein_220 MarR family winged helix-turn-helix transcriptional regulator -
  DV131_RS01240 - 217166..217882 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DV131_RS01250 ply 218763..220178 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  DV131_RS01255 - 220189..220599 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37894.14 Da        Isoelectric Point: 4.4301

>NTDB_id=304738 DV131_RS11665 WP_050209599.1 214695..215726(-) (rcrQ) [Streptococcus pneumoniae strain M26368]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSVTAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMIEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIACALLKDASLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSIIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=304738 DV131_RS11665 WP_050209599.1 214695..215726(-) (rcrQ) [Streptococcus pneumoniae strain M26368]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGTGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATAGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTTGTGCCCTTCTTAAGGATGCATCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAATCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-117)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

79.464

65.306

0.519
  rcrP Streptococcus mutans UA159

37.283

100

0.376

Multiple sequence alignment