Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DV131_RS03055 Genome accession   NZ_CP031246
Coordinates   552369..553127 (+) Length   252 a.a.
NCBI ID   WP_000410381.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26368     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 547369..558127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS12055 - 547772..547897 (+) 126 WP_001258159.1 hypothetical protein -
  DV131_RS03025 comE 547959..548711 (-) 753 WP_000866075.1 competence system response regulator transcription factor ComE Regulator
  DV131_RS03030 comD/comD1 548708..550033 (-) 1326 WP_025169508.1 competence system sensor histidine kinase ComD Regulator
  DV131_RS03035 comC 550046..550186 (-) 141 WP_000799697.1 competence-stimulating peptide ComC Regulator
  DV131_RS03045 rlmH 550468..550947 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DV131_RS03050 htrA 551130..552311 (+) 1182 WP_000681598.1 S1C family serine protease Regulator
  DV131_RS03055 spo0J 552369..553127 (+) 759 WP_000410381.1 ParB/RepB/Spo0J family partition protein Regulator
  DV131_RS03060 dnaA 553340..554701 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  DV131_RS03065 dnaN 554860..555996 (+) 1137 WP_000581147.1 DNA polymerase III subunit beta -
  DV131_RS03070 - 556061..556255 (+) 195 WP_000285191.1 DUF951 family protein -
  DV131_RS03075 ychF 556339..557454 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  DV131_RS03080 pth 557525..558094 (+) 570 WP_000163928.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29255.63 Da        Isoelectric Point: 8.9980

>NTDB_id=304702 DV131_RS03055 WP_000410381.1 552369..553127(+) (spo0J) [Streptococcus pneumoniae strain M26368]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNYFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIIYFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=304702 DV131_RS03055 WP_000410381.1 552369..553127(+) (spo0J) [Streptococcus pneumoniae strain M26368]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATTATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTATTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment