Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   DV428_RS04085 Genome accession   NZ_CP031243
Coordinates   795596..796114 (-) Length   172 a.a.
NCBI ID   WP_053466044.1    Uniprot ID   A0A0M1GK43
Organism   Haemophilus haemolyticus strain M19346     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 790596..801114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV428_RS04070 comQ 793923..794210 (-) 288 WP_162790813.1 DUF5374 domain-containing protein Machinery gene
  DV428_RS04075 comP 794203..794886 (-) 684 WP_114908772.1 DUF2572 family protein Machinery gene
  DV428_RS04080 comO 794883..795602 (-) 720 WP_053466076.1 type II secretion system protein J Machinery gene
  DV428_RS04085 comN 795596..796114 (-) 519 WP_053466044.1 type II secretion system protein Machinery gene
  DV428_RS04090 suhB 796314..797117 (+) 804 WP_046941986.1 inositol-1-monophosphatase -
  DV428_RS04095 nrfE 797227..799134 (+) 1908 WP_114908773.1 heme lyase NrfEFG subunit NrfE -
  DV428_RS04100 - 799134..799664 (+) 531 WP_114908774.1 DsbE family thiol:disulfide interchange protein -
  DV428_RS04105 nrfF 799661..800806 (+) 1146 WP_114908775.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19866.92 Da        Isoelectric Point: 8.9404

>NTDB_id=304580 DV428_RS04085 WP_053466044.1 795596..796114(-) (comN) [Haemophilus haemolyticus strain M19346]
MQKGVTLVELLIGLAIISIALNFAVPLWQTDSPKTILAKEQHHLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNDQTCDCLNPTNCPKEVYAHFYYPYFPKKTMIQSQYLYPKEITRFYGARNTSVTRCFILQAENERTLFSFFNVGSIRL
KTNQAASACNQS

Nucleotide


Download         Length: 519 bp        

>NTDB_id=304580 DV428_RS04085 WP_053466044.1 795596..796114(-) (comN) [Haemophilus haemolyticus strain M19346]
ATGCAGAAAGGTGTGACATTAGTGGAATTATTGATTGGGTTAGCAATCATCAGCATTGCGCTGAATTTTGCCGTGCCATT
ATGGCAAACAGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCACCTATATTTATTTCTACGCCAAATTCAAGCAC
GGGCTGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATGATCAAACTTGCGATTGTTTAAACCCAACAAACTGCCCGAAAGAGGTTTATGCTCATTTTTACTATCCTTA
TTTCCCTAAAAAAACGATGATTCAAAGCCAGTACCTTTATCCTAAAGAAATTACAAGATTTTATGGGGCTCGTAATACGA
GTGTTACTCGTTGTTTTATTCTACAAGCGGAAAATGAACGTACATTATTTTCATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACCAATCAAGCGGCTAGTGCATGCAATCAATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1GK43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

90.588

98.837

0.895

Multiple sequence alignment