Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DV428_RS04075 Genome accession   NZ_CP031243
Coordinates   794203..794886 (-) Length   227 a.a.
NCBI ID   WP_114908772.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19346     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 789203..799886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV428_RS04060 nrdR 790004..790453 (-) 450 WP_046949673.1 transcriptional regulator NrdR -
  DV428_RS04065 recC 790516..793875 (-) 3360 WP_114908770.1 exodeoxyribonuclease V subunit gamma -
  DV428_RS04070 comQ 793923..794210 (-) 288 WP_162790813.1 DUF5374 domain-containing protein Machinery gene
  DV428_RS04075 comP 794203..794886 (-) 684 WP_114908772.1 DUF2572 family protein Machinery gene
  DV428_RS04080 comO 794883..795602 (-) 720 WP_053466076.1 type II secretion system protein J Machinery gene
  DV428_RS04085 comN 795596..796114 (-) 519 WP_053466044.1 type II secretion system protein Machinery gene
  DV428_RS04090 suhB 796314..797117 (+) 804 WP_046941986.1 inositol-1-monophosphatase -
  DV428_RS04095 nrfE 797227..799134 (+) 1908 WP_114908773.1 heme lyase NrfEFG subunit NrfE -
  DV428_RS04100 - 799134..799664 (+) 531 WP_114908774.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25594.41 Da        Isoelectric Point: 8.4535

>NTDB_id=304578 DV428_RS04075 WP_114908772.1 794203..794886(-) (comP) [Haemophilus haemolyticus strain M19346]
MTIQKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTEEKKQTACLNLPLNNNESVKQISIT
LDGATDAIQYFLWCERMSLFKKSPTKGDNQGALKDFIHTEKLTDFRPRFSSPPRILNVNKTPKLYWFSDSQVEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKPVVTTLVQQYSQWQLAEKSWSDFNVPDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=304578 DV428_RS04075 WP_114908772.1 794203..794886(-) (comP) [Haemophilus haemolyticus strain M19346]
ATGACAATACAAAAAGGCATTATTACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGTCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTAGAAAGAACATTACAACTGCAAAAAA
TGACAGAGGAGAAAAAACAAACTGCCTGTCTTAATTTACCGTTAAATAATAATGAAAGTGTAAAGCAAATCAGCATCACT
CTTGATGGTGCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCCACAAAAGG
CGATAATCAAGGTGCATTGAAAGATTTTATTCACACAGAAAAACTAACGGATTTTCGACCGCGCTTTTCTTCCCCTCCCA
GAATTTTAAACGTGAATAAAACACCTAAGCTTTATTGGTTTTCAGATTCTCAAGTGGAAGTTGAAATTAATGGCACTGTG
TCTGCTGTATTAATTGCAGAGGGAGATTTAAAACTAACGGGCAAAGGGAGGATTAGTGGCGCGGTGATCACCAACGGAAA
TCTAACTTTAGATGGGGTGACTTTGGCCTATGGAAAACCTGTCGTAACAACCTTAGTGCAACAATATAGTCAGTGGCAGT
TGGCAGAAAAAAGTTGGAGTGATTTTAATGTTCCAGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

89.427

100

0.894

Multiple sequence alignment