Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV384_RS00070 Genome accession   NZ_CP031241
Coordinates   16804..17151 (+) Length   115 a.a.
NCBI ID   WP_005693346.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 11804..22151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS00055 - 13550..15109 (+) 1560 WP_114934353.1 phosphoethanolamine transferase -
  DV384_RS00060 lspA 15179..15694 (+) 516 WP_005664259.1 signal peptidase II -
  DV384_RS00065 ispH 15691..16635 (+) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV384_RS00070 comE1/comEA 16804..17151 (+) 348 WP_005693346.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV384_RS00075 - 17198..17956 (-) 759 WP_042611123.1 DeoR/GlpR family DNA-binding transcription regulator -
  DV384_RS00080 ltnD 18127..19032 (+) 906 WP_114890530.1 L-threonate dehydrogenase -
  DV384_RS00085 otnK 19035..20276 (+) 1242 WP_114890529.1 3-oxo-tetronate kinase -
  DV384_RS00090 otnC 20273..20905 (+) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  DV384_RS00095 otnI 20908..21684 (+) 777 WP_114890528.1 2-oxo-tetronate isomerase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12355.16 Da        Isoelectric Point: 8.0085

>NTDB_id=304485 DV384_RS00070 WP_005693346.1 16804..17151(+) (comE1/comEA) [Haemophilus influenzae strain M17648]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304485 DV384_RS00070 WP_005693346.1 16804..17151(+) (comE1/comEA) [Haemophilus influenzae strain M17648]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

98.214

97.391

0.957
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment