Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV427_RS01955 Genome accession   NZ_CP031240
Coordinates   416308..416655 (-) Length   115 a.a.
NCBI ID   WP_065250343.1    Uniprot ID   A0AAQ1YLA5
Organism   Haemophilus haemolyticus strain M19345     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411308..421655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS01930 thiQ 412124..412771 (-) 648 WP_114891127.1 thiamine ABC transporter ATP-binding protein -
  DV427_RS01935 thiP 412755..414371 (-) 1617 WP_114891128.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DV427_RS01940 thiB 414376..415374 (-) 999 WP_114891129.1 thiamine ABC transporter substrate binding subunit -
  DV427_RS01945 - 415552..415794 (-) 243 WP_106013894.1 hypothetical protein -
  DV427_RS01950 copM 415902..416279 (+) 378 WP_114891130.1 CopM family metallochaperone -
  DV427_RS01955 comE1/comEA 416308..416655 (-) 348 WP_065250343.1 ComEA family DNA-binding protein Machinery gene
  DV427_RS01960 ispH 416826..417770 (-) 945 WP_005634483.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV427_RS01965 lspA 417767..418282 (-) 516 WP_114891131.1 signal peptidase II -
  DV427_RS01970 - 418352..419908 (-) 1557 WP_114891132.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12322.14 Da        Isoelectric Point: 8.0102

>NTDB_id=304458 DV427_RS01955 WP_065250343.1 416308..416655(-) (comE1/comEA) [Haemophilus haemolyticus strain M19345]
MKLMKTLFTSVVLCGALVASSAFAEEKTAEQAVQPVVATQTEAQVAPATVSDKLNINTATVSEIQKALTGIGAKKAEAIV
QYREKHGNFTSAEQLLEVQGIGKATLERNRDRITF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304458 DV427_RS01955 WP_065250343.1 416308..416655(-) (comE1/comEA) [Haemophilus haemolyticus strain M19345]
ATGAAATTAATGAAAACATTATTTACTTCAGTTGTATTGTGTGGCGCGCTGGTTGCCTCTTCGGCTTTTGCTGAGGAAAA
AACTGCAGAGCAGGCTGTTCAACCTGTTGTGGCTACTCAAACTGAGGCTCAAGTTGCACCGGCTACTGTGAGTGATAAAT
TGAATATCAATACGGCAACCGTTAGTGAAATTCAAAAAGCCTTAACAGGAATCGGTGCAAAAAAAGCAGAAGCGATAGTG
CAATATCGTGAAAAACACGGTAATTTCACGAGTGCTGAACAACTATTAGAAGTACAAGGGATTGGTAAAGCAACACTTGA
AAGAAACCGTGATCGAATCACTTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

84.821

97.391

0.826
  comEA/comE1 Glaesserella parasuis strain SC1401

57.018

99.13

0.565
  comEA Vibrio campbellii strain DS40M4

39.091

95.652

0.374

Multiple sequence alignment