Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DV427_RS00935 Genome accession   NZ_CP031240
Coordinates   203808..204485 (+) Length   225 a.a.
NCBI ID   WP_114890986.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 198808..209485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS00895 mutM 198837..199652 (-) 816 WP_114890984.1 DNA-formamidopyrimidine glycosylase -
  DV427_RS00900 rpmG 199724..199894 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  DV427_RS00905 rpmB 199906..200142 (-) 237 WP_005542826.1 50S ribosomal protein L28 -
  DV427_RS00910 radC 200356..201021 (-) 666 WP_048954240.1 RadC family protein -
  DV427_RS00915 coaBC 201185..202387 (+) 1203 WP_114890985.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DV427_RS00920 dut 202435..202890 (+) 456 WP_005631431.1 dUTP diphosphatase -
  DV427_RS00925 slmA 202894..203550 (+) 657 WP_046938838.1 nucleoid occlusion factor SlmA -
  DV427_RS00930 - 203572..203823 (+) 252 WP_005631427.1 YheU family protein -
  DV427_RS00935 crp 203808..204485 (+) 678 WP_114890986.1 cAMP-activated global transcriptional regulator CRP Regulator
  DV427_RS00940 rlmC 204853..206031 (-) 1179 WP_114890987.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  DV427_RS00945 nagZ 206028..207080 (-) 1053 WP_114890988.1 beta-N-acetylhexosaminidase -
  DV427_RS00950 - 207084..207434 (-) 351 WP_114890989.1 YcfL family protein -
  DV427_RS00955 hinT 207434..207784 (-) 351 WP_114890990.1 purine nucleoside phosphoramidase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25294.99 Da        Isoelectric Point: 6.6054

>NTDB_id=304455 DV427_RS00935 WP_114890986.1 203808..204485(+) (crp) [Haemophilus haemolyticus strain M19345]
MSNELTEIDEVVTSSQEEETTQRDPVLDWFLTHCHLHKYPAKSTLIHAGEDATTLYYVIKGTVMVSAKDDEGKEMILTYL
GAGQFFGEAGLFDEGSKRSAWVKTKTTCEIAEISYKKYRQLIQANPEILMFLTAQLARRLQNTSRQVSNLAFLDVAGRIA
QTLMNLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGAR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=304455 DV427_RS00935 WP_114890986.1 203808..204485(+) (crp) [Haemophilus haemolyticus strain M19345]
ATGTCAAATGAATTAACCGAAATTGATGAAGTTGTAACCTCCTCTCAAGAAGAAGAGACAACTCAACGAGATCCAGTTTT
AGATTGGTTTCTTACTCACTGCCATTTACATAAATATCCTGCAAAATCGACTTTAATTCACGCAGGTGAAGATGCAACGA
CACTTTATTATGTCATTAAAGGTACTGTAATGGTCTCTGCAAAAGATGATGAAGGAAAAGAAATGATCCTAACTTATCTA
GGAGCCGGGCAATTCTTTGGAGAAGCAGGGCTATTTGATGAAGGTTCAAAACGTTCAGCATGGGTTAAAACAAAAACAAC
ATGTGAAATTGCTGAAATTTCCTATAAAAAATATCGTCAATTAATTCAAGCTAACCCAGAAATCTTAATGTTTTTAACCG
CACAATTGGCAAGACGTTTACAAAATACTTCACGCCAAGTGAGTAATTTAGCATTCTTAGACGTAGCAGGTCGCATTGCT
CAAACGCTAATGAACTTAGCTAAACAGCCTGAAGCAATGACACATCCTGATGGAATGCAAATAAAAATTACACGTCAAGA
AATAGGGCAAATGGTTGGTTGTTCACGAGAAACTGTAGGACGTATTATTAAGATGTTAGAGGATCAGAATCTTATCCATG
CTCATGGAAAAACTATCGTTGTATATGGCGCAAGATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(37-125)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(157-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

97.778

100

0.978
  crp Vibrio cholerae strain A1552

75

90.667

0.68
  crp Acinetobacter baumannii D1279779

47.668

85.778

0.409

Multiple sequence alignment