Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DV427_RS00860 Genome accession   NZ_CP031240
Coordinates   191006..191722 (+) Length   238 a.a.
NCBI ID   WP_114892157.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186006..196722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS00840 - 186815..187345 (-) 531 WP_114890976.1 DsbE family thiol:disulfide interchange protein -
  DV427_RS00845 nrfE 187345..189252 (-) 1908 WP_114890977.1 heme lyase NrfEFG subunit NrfE -
  DV427_RS00850 suhB 189491..190294 (-) 804 WP_005633301.1 inositol-1-monophosphatase -
  DV427_RS00855 comN 190494..191012 (+) 519 WP_114890978.1 type II secretion system protein Machinery gene
  DV427_RS00860 comO 191006..191722 (+) 717 WP_114892157.1 PulJ/GspJ family protein Machinery gene
  DV427_RS00865 comP 191737..192420 (+) 684 WP_114890979.1 DUF2572 family protein Machinery gene
  DV427_RS00870 comQ 192413..192700 (+) 288 WP_162790307.1 DUF5374 domain-containing protein Machinery gene
  DV427_RS00875 recC 192748..196098 (+) 3351 WP_114890981.1 exodeoxyribonuclease V subunit gamma -
  DV427_RS00880 nrdR 196182..196631 (+) 450 WP_065246121.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26748.93 Da        Isoelectric Point: 8.9327

>NTDB_id=304452 DV427_RS00860 WP_114892157.1 191006..191722(+) (comO) [Haemophilus haemolyticus strain M19345]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHILLHLKLQAELQRTLQLIGKDLRRLGFRALNTKGTESNL
SLFELDEQGTAIFISQEDNAPLNSCVLFFYDLNKNGCIGKDSPKTCMKNGKNTSKNSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWTDLLDNNEYEVTTLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=304452 DV427_RS00860 WP_114892157.1 191006..191722(+) (comO) [Haemophilus haemolyticus strain M19345]
ATCATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCGCTAGCGTTGTCATCTTTATTATTACTAAG
CATTTCGCATTTTTATGTGCAAATTCAAACGCAAAATCAACACATATTATTGCATTTAAAACTACAAGCAGAACTACAAC
GAACATTACAGCTCATCGGTAAAGATCTTAGGCGATTGGGATTTAGAGCATTAAATACAAAAGGAACAGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACTGCTATTTTCATTAGTCAAGAAGATAACGCCCCACTTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGATGTATTGGCAAAGACTCACCAAAAACTTGTATGAAAAATGGGAAAAATACCT
CCAAAAACAGTACAGAAGAATTATTCGGTTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACAGCAGAAACTTGTAAACGAGCTTTTCAACAAACCGCTTGCAATGCTGGAGGCGGTTGGACAGA
TTTATTAGATAACAATGAATACGAAGTCACTACCCTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATAAGTTATGAAACATCCCTTGTCGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

94.538

100

0.945

Multiple sequence alignment