Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   DV427_RS00870 Genome accession   NZ_CP031240
Coordinates   192413..192700 (+) Length   95 a.a.
NCBI ID   WP_162790307.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M19345     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 187413..197700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV427_RS00850 suhB 189491..190294 (-) 804 WP_005633301.1 inositol-1-monophosphatase -
  DV427_RS00855 comN 190494..191012 (+) 519 WP_114890978.1 type II secretion system protein Machinery gene
  DV427_RS00860 comO 191006..191722 (+) 717 WP_114892157.1 PulJ/GspJ family protein Machinery gene
  DV427_RS00865 comP 191737..192420 (+) 684 WP_114890979.1 DUF2572 family protein Machinery gene
  DV427_RS00870 comQ 192413..192700 (+) 288 WP_162790307.1 DUF5374 domain-containing protein Machinery gene
  DV427_RS00875 recC 192748..196098 (+) 3351 WP_114890981.1 exodeoxyribonuclease V subunit gamma -
  DV427_RS00880 nrdR 196182..196631 (+) 450 WP_065246121.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10965.72 Da        Isoelectric Point: 9.2025

>NTDB_id=304454 DV427_RS00870 WP_162790307.1 192413..192700(+) (comQ) [Haemophilus haemolyticus strain M19345]
MNKGMSLTTLLFSLALFSILFIAFNQWTASQRKSAVKTYQDFQAIQIAENQAQRQFLGLACEQLIQQNGLTFRVQCENER
VIVRYPMDEISIKTK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=304454 DV427_RS00870 WP_162790307.1 192413..192700(+) (comQ) [Haemophilus haemolyticus strain M19345]
ATGAATAAAGGCATGTCGCTCACTACACTATTATTTTCTTTGGCTTTATTTAGCATTTTATTTATTGCGTTCAATCAATG
GACGGCAAGCCAAAGAAAAAGTGCGGTGAAAACTTATCAAGATTTTCAGGCGATACAGATTGCGGAGAATCAAGCTCAAC
GCCAATTTTTAGGATTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTGTTCAATGTGAAAACGAACGC
GTCATTGTGCGTTATCCGATGGATGAAATTTCGATAAAAACTAAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

86.316

100

0.863

Multiple sequence alignment