Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EPB55_RS14535 Genome accession   NZ_CP035731
Coordinates   2963919..2965949 (+) Length   676 a.a.
NCBI ID   WP_013572115.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2958919..2970949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS14510 rsxC 2959323..2961848 (-) 2526 WP_130194774.1 electron transport complex subunit RsxC -
  EPB55_RS14515 rsxB 2961861..2962457 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  EPB55_RS14520 rsxA 2962459..2963037 (-) 579 WP_011080895.1 electron transport complex subunit RsxA -
  EPB55_RS14530 - 2963635..2963820 (+) 186 WP_011080894.1 hypothetical protein -
  EPB55_RS14535 uvrB 2963919..2965949 (+) 2031 WP_013572115.1 excinuclease ABC subunit UvrB Machinery gene
  EPB55_RS14540 luxO 2966223..2967623 (+) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EPB55_RS14545 luxU 2967623..2967970 (+) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  EPB55_RS14550 - 2968071..2968961 (-) 891 WP_130194773.1 YvcK family protein -
  EPB55_RS14555 moaA 2969277..2970266 (+) 990 WP_060532977.1 GTP 3',8-cyclase MoaA -
  EPB55_RS14560 moaB 2970347..2970859 (+) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77090.88 Da        Isoelectric Point: 5.0918

>NTDB_id=304440 EPB55_RS14535 WP_013572115.1 2963919..2965949(+) (uvrB) [Vibrio vulnificus strain 2142-77]
MSKLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLH
IRRGDVMDQRDILRRLAELQYSRNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLP
RFTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADSITK
SMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEIT
KLEAQMYKHAQNLEFELAAQKRDEIEKLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=304440 EPB55_RS14535 WP_013572115.1 2963919..2965949(+) (uvrB) [Vibrio vulnificus strain 2142-77]
ATGAGCAAACTTTACGATCTGGTTTCTGACTATGCGCCATCGGGAGATCAACCAACGGCGATCAAACAACTGACAGAAGG
GTTAGATGCTGGCTTGGCTCACCAAACCTTACTTGGGGTGACGGGATCCGGTAAAACATTTACTTTGGCGAATGTGATTG
CTCAAGCACAACGTCCTGCAATTCTGCTCGCGCCAAACAAAACTCTCGCCGCCCAACTTTACGGCGAGATGAAAGCGTTT
TTCCCCAATAACGCGGTCGAATATTTTGTCTCTTACTACGATTATTACCAACCTGAAGCCTATGTGCCAACCACCGACAC
CTTTATAGAGAAGGACTCATCGGTCAACGCTCATATTGAACAAATGCGTTTATCGGCCACCAAAGCGTTATTGGAGCGAA
AAGACGCTATTATCGTCGCCTCTGTTTCGGCTATTTATGGTTTGGGTGATCCCGAGGCCTACCTGCAAATGATGTTGCAT
ATACGCCGTGGTGATGTGATGGATCAACGCGACATACTGCGCCGTTTGGCTGAGCTGCAATATAGCCGTAACGATATTGC
TTTTGAACGAGGCCAATTTCGCGTGCGCGGAGAGGTGATCGACGTTTTTCCGGCTGAATCGGACCAAGATGCGGTGCGCA
TCGAGATGTTTGATGATGAGATCGACTGCATCAGTGTGTTTGATCCACTGACCGGAGTGGTCAAACAACGCGATTTACCC
CGCTTTACTATTTACCCTAAGACTCACTACGTCACACCTCGAGAGCGTATTCTGCAGGCGATTGAAAACATCAAACAAGA
GCTGCGTGAGCGACAAACTTACTTGCGTGACAACAATAAATTGTTGGAAGAGCAACGTATTAGTCAGCGTACCCAATTCG
ATATTGAAATGATGAATGAGCTGGGATTCTGCTCTGGCATCGAAAACTACTCGCGTTACCTCAGCGGTCGAGCGGAAGGT
GAGCCGCCTCCAACGTTATTTGACTACTTACCACACGACGGTTTGTTGATCATTGATGAATCTCACGTGACAGTGCCACA
AATTGGCGCAATGTATAAAGGTGACCGCTCACGGAAAGAGACCTTGGTTGAATATGGTTTCCGTTTGCCTTCAGCATTGG
ACAATCGACCATTGAAATTTGAAGAGTTCGAAGCGCTTGCGCCACAAACTATTTTCGTTTCAGCCACTCCGGGTAATTAC
GAACTAGAGAAAAGTGCGGGCGAAATTGCTGACCAAGTGGTGCGTCCGACCGGATTGCTCGATCCTGTACTGGAAGTGCG
ACCAGTGGCGACTCAAGTGGATGATCTGCTTTCTGAGATCCGCATTCGCGCGGTGAAAGATGAACGCGTGTTAGTGACAA
CACTGACCAAACGTATGGCGGAAGATCTAACTGAATACTTGCACGAGCACGATGTGAAGGTACGTTACCTACACTCTGAT
ATCGACACGGTTGAACGAGTGGAGATCATTCGTGACTTGAGGCTAGGGGAGTTCGATGTGTTGGTGGGGATTAACTTGTT
ACGCGAGGGCCTCGACATGCCTGAAGTGTCTTTGGTTGCGATTCTCGATGCTGATAAAGAAGGCTTTTTACGTTCAGAGC
GCTCATTGATTCAGACCATTGGCCGTGCAGCCCGTAACCTCCATGGTAAAGCGATTTTGTATGCAGACTCCATCACCAAA
TCGATGAAGAAAGCGATGGATGAAACGGAACGACGCCGTGAGAAACAGCAAGCGTACAATGAAAAGATGGGCATTCAGCC
TCAAGCCTTGAAGCGTAATATCAAAGATATTATGGAGCTGGGCGATATTACGAAATCTCGCAAGCAGAAAGTGAGCAAAA
CGGTGCCATTGTCGAAAGTGGCTGAACCATCACTGTCCTATAATGTGTTGACGCCACAGCAACTGGAAAAAGAAATCACA
AAACTGGAAGCGCAAATGTACAAACACGCTCAGAATTTGGAATTTGAGTTGGCCGCGCAGAAGCGTGATGAAATTGAAAA
GTTGCGTCAGCAGTTTATTGCTAACAGCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(16-138)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.297

97.485

0.549
  uvrB Streptococcus pneumoniae R6

56.297

97.485

0.549
  uvrB Streptococcus pneumoniae D39

56.297

97.485

0.549