Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EPB55_RS12100 Genome accession   NZ_CP035731
Coordinates   2438867..2439592 (-) Length   241 a.a.
NCBI ID   WP_011078574.1    Uniprot ID   A0A3Q0L243
Organism   Vibrio vulnificus strain 2142-77     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2433867..2444592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS12075 trpR 2434427..2434735 (+) 309 WP_011078578.1 trp operon repressor -
  EPB55_RS12080 yjjX 2434766..2435302 (-) 537 WP_165387137.1 inosine/xanthosine triphosphatase -
  EPB55_RS12085 pheA 2435327..2436505 (-) 1179 WP_011078576.1 prephenate dehydratase -
  EPB55_RS12090 raiA 2436749..2437072 (-) 324 WP_011078575.1 ribosome-associated translation inhibitor RaiA -
  EPB55_RS12095 - 2437406..2438743 (-) 1338 WP_103277047.1 IS4-like element ISVvu3 family transposase -
  EPB55_RS12100 comL 2438867..2439592 (-) 726 WP_011078574.1 outer membrane protein assembly factor BamD Machinery gene
  EPB55_RS12105 rluD 2439729..2440705 (+) 977 Protein_2267 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EPB55_RS12110 pgeF 2440709..2441425 (+) 717 WP_193783991.1 peptidoglycan editing factor PgeF -
  EPB55_RS12115 clpC 2441543..2444116 (+) 2574 WP_045596288.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27786.57 Da        Isoelectric Point: 5.6928

>NTDB_id=304428 EPB55_RS12100 WP_011078574.1 2438867..2439592(-) (comL) [Vibrio vulnificus strain 2142-77]
MKHHTLAGLLAVSVLFGCSSSEQIVPDVPPAELYAEAQTSLQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRSDRDPEPVKQAFDDFKKLLERYPNSPYAED
SQKRMFALKNRLAEYDLATADYYLRREAWIAAINRSQELQKTYPDTIAARKSLKIQLEAYKQLGLQDAIARTEELIRLNP
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=304428 EPB55_RS12100 WP_011078574.1 2438867..2439592(-) (comL) [Vibrio vulnificus strain 2142-77]
ATGAAACACCATACTTTAGCAGGCCTGCTCGCGGTATCAGTGTTGTTTGGCTGTTCAAGCAGTGAACAAATTGTGCCGGA
TGTGCCACCAGCAGAGCTGTATGCAGAAGCACAAACCTCTCTTCAAGGAGGAAACTGGCTCACAGCGATTGAGAAACTAG
AAGCGCTAGATTCCCGCTACCCTTTTGGTGCTTACTCAGAACAAGTACAACTTGATTTGATTTACGCCTATTACAAGAAC
GATGATTTGGCTTTGGGTCTGGCGACCATTTCGCGTTTTACGCGTTTAAATCCAACACACGAAAAAATGGACTGGGTGCT
GTACATGCGTGGTCTCACCCATATGGCACAAGATCGTAACTTCATGCACGACTTGTTTAACATTGATCGTAGCGATCGCG
ATCCTGAGCCAGTCAAACAAGCTTTTGATGATTTCAAAAAACTGCTTGAGCGCTATCCAAACAGCCCATATGCGGAAGAT
TCTCAAAAACGCATGTTTGCTCTTAAAAACCGTTTAGCAGAATATGATCTAGCAACCGCCGATTACTATCTGCGTCGTGA
AGCTTGGATTGCAGCCATCAATCGTTCTCAGGAGTTGCAGAAAACCTATCCAGATACCATCGCTGCGAGAAAATCACTCA
AAATCCAGCTTGAGGCGTATAAACAATTAGGTTTACAAGATGCCATCGCACGCACTGAAGAGTTGATACGTCTGAATCCG
CTCTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L243

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.585

0.394
  comL Neisseria gonorrhoeae MS11

39.167

99.585

0.39