Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | DV369_RS00110 | Genome accession | NZ_CP031239 |
| Coordinates | 23621..24130 (+) | Length | 169 a.a. |
| NCBI ID | WP_050948870.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain M13034 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 18621..29130
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DV369_RS00090 | - | 18720..19049 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| DV369_RS00095 | - | 19202..20047 (-) | 846 | WP_005652116.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| DV369_RS00100 | - | 20124..22724 (-) | 2601 | WP_050948872.1 | penicillin-binding protein 1A | - |
| DV369_RS00105 | comA | 22823..23620 (+) | 798 | WP_050948871.1 | pilus assembly protein PilM | Machinery gene |
| DV369_RS00110 | comB | 23621..24130 (+) | 510 | WP_050948870.1 | hypothetical protein | Machinery gene |
| DV369_RS00115 | comC | 24127..24648 (+) | 522 | WP_114893694.1 | competence protein ComC | Machinery gene |
| DV369_RS00120 | comD | 24645..25058 (+) | 414 | WP_114893695.1 | pilus assembly protein PilP | Machinery gene |
| DV369_RS00125 | comE | 25068..26411 (+) | 1344 | WP_114893696.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| DV369_RS00130 | tnpA | 26408..26863 (+) | 456 | WP_105888566.1 | IS200/IS605 family transposase | - |
| DV369_RS00135 | - | 27177..27863 (+) | 687 | WP_114893697.1 | ComF family protein | - |
| DV369_RS00140 | nfuA | 27939..28535 (+) | 597 | WP_021034385.1 | Fe-S biogenesis protein NfuA | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 19976.93 Da Isoelectric Point: 9.3342
>NTDB_id=304417 DV369_RS00110 WP_050948870.1 23621..24130(+) (comB) [Haemophilus influenzae strain M13034]
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEQLNQQLYKTAKKIEQLRSAVQVG
EILTSIPKEQVKKSLQRLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFLF
DVEQVGEDK
MSMNLLPWRTYQHQNRLRRLAFYIALFILLAINLTLAFSNLIEQQKQDLQAQQTSFEQLNQQLYKTAKKIEQLRSAVQVG
EILTSIPKEQVKKSLQRLSELPFQQGELNKFKQDAHNLSLEGLAQDQREFELIHQFLKKHFPNVKLSQFQPEQQSLYFLF
DVEQVGEDK
Nucleotide
Download Length: 510 bp
>NTDB_id=304417 DV369_RS00110 WP_050948870.1 23621..24130(+) (comB) [Haemophilus influenzae strain M13034]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAACCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACTTTGGCTTTTAGTAATTTAATTGAACAACAAAAACAAGATCTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTTATAAAACCGCCAAGAAAATTGAACAGTTGCGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCGGCTAAGTGAATTACCTTTTCAGCAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAACCTGAACAACAGTCATTGTATTTTCTCTTT
GATGTGGAACAAGTTGGAGAAGATAAGTGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAACCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAACTTTGGCTTTTAGTAATTTAATTGAACAACAAAAACAAGATCTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTTATAAAACCGCCAAGAAAATTGAACAGTTGCGTAGTGCAGTGCAGGTTGGC
GAAATTTTGACATCTATTCCTAAAGAGCAAGTAAAAAAGAGTTTACAGCGGCTAAGTGAATTACCTTTTCAGCAAGGAGA
ACTGAATAAATTTAAACAAGATGCTCATAACTTAAGTTTGGAAGGTCTCGCACAAGATCAAAGAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGCCAGTTTCAACCTGAACAACAGTCATTGTATTTTCTCTTT
GATGTGGAACAAGTTGGAGAAGATAAGTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
86.826 |
98.817 |
0.858 |
| comB | Haemophilus influenzae Rd KW20 |
85.629 |
98.817 |
0.846 |