Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DV369_RS00105 Genome accession   NZ_CP031239
Coordinates   22823..23620 (+) Length   265 a.a.
NCBI ID   WP_050948871.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M13034     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17823..28620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS00085 recR 17985..18587 (-) 603 WP_005641249.1 recombination mediator RecR -
  DV369_RS00090 - 18720..19049 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  DV369_RS00095 - 19202..20047 (-) 846 WP_005652116.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV369_RS00100 - 20124..22724 (-) 2601 WP_050948872.1 penicillin-binding protein 1A -
  DV369_RS00105 comA 22823..23620 (+) 798 WP_050948871.1 pilus assembly protein PilM Machinery gene
  DV369_RS00110 comB 23621..24130 (+) 510 WP_050948870.1 hypothetical protein Machinery gene
  DV369_RS00115 comC 24127..24648 (+) 522 WP_114893694.1 competence protein ComC Machinery gene
  DV369_RS00120 comD 24645..25058 (+) 414 WP_114893695.1 pilus assembly protein PilP Machinery gene
  DV369_RS00125 comE 25068..26411 (+) 1344 WP_114893696.1 type IV pilus secretin PilQ family protein Machinery gene
  DV369_RS00130 tnpA 26408..26863 (+) 456 WP_105888566.1 IS200/IS605 family transposase -
  DV369_RS00135 - 27177..27863 (+) 687 WP_114893697.1 ComF family protein -
  DV369_RS00140 nfuA 27939..28535 (+) 597 WP_021034385.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31540.82 Da        Isoelectric Point: 5.3488

>NTDB_id=304416 DV369_RS00105 WP_050948871.1 22823..23620(+) (comA) [Haemophilus influenzae strain M13034]
MQFSLKNYLTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVLEKELPISLDELWFDYRSTPLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENSLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPEHWQRV
ETELPFIALGNALWQKDLYQQKVDN

Nucleotide


Download         Length: 798 bp        

>NTDB_id=304416 DV369_RS00105 WP_050948871.1 22823..23620(+) (comA) [Haemophilus influenzae strain M13034]
ATGCAATTCTCCCTGAAAAATTACCTCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAACTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGCTTGAAAAAGAGCTGCCTATTTCTTT
AGATGAATTATGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATAGCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
TTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACGCCATTACCAGAACACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTGGGCAACGCACTATGGCAAAAAGATTTATATCAACAAAAAGTAGATAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962
  comA Haemophilus influenzae Rd KW20

94.34

100

0.943

Multiple sequence alignment