Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DV441_RS04325 Genome accession   NZ_CP031238
Coordinates   909380..910033 (+) Length   217 a.a.
NCBI ID   WP_080948131.1    Uniprot ID   -
Organism   Haemophilus haemolyticus strain M28486     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 904380..915033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV441_RS04300 hcr 905053..906075 (+) 1023 WP_046953372.1 NADH oxidoreductase -
  DV441_RS04305 - 906188..907006 (+) 819 WP_046953371.1 Cof-type HAD-IIB family hydrolase -
  DV441_RS04310 crcB 907006..907392 (+) 387 WP_046953370.1 fluoride efflux transporter CrcB -
  DV441_RS04315 recX 907389..907847 (-) 459 WP_046953369.1 recombination regulator RecX -
  DV441_RS04320 recA 907928..908992 (-) 1065 WP_005636084.1 recombinase RecA Machinery gene
  DV441_RS04325 sxy/tfoX 909380..910033 (+) 654 WP_080948131.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25179.35 Da        Isoelectric Point: 9.8097

>NTDB_id=304392 DV441_RS04325 WP_080948131.1 909380..910033(+) (sxy/tfoX) [Haemophilus haemolyticus strain M28486]
MNIKDEHIDNVCSILDQLVGNVTFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEDELAIQLSKLGCEPFTTNELNKRFVL
SQYYALSEQVMRNNMLCRKLIILSIQQIRDQKLDRTLRKLNRLKDLPNLTIKHERALIKAGIADVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQFLSQSEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=304392 DV441_RS04325 WP_080948131.1 909380..910033(+) (sxy/tfoX) [Haemophilus haemolyticus strain M28486]
ATGAATATAAAAGACGAGCATATAGATAATGTTTGCTCTATATTAGATCAGTTAGTAGGAAATGTAACCTTTAAAAATCT
TTTTACAGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAGAATAAAAAACTTTATCTACGTGGTG
AGGATGAACTTGCTATTCAATTAAGTAAATTAGGTTGTGAACCATTTACAACAAATGAGTTGAATAAGAGATTTGTACTT
TCTCAATATTACGCACTTTCAGAGCAGGTGATGCGTAATAATATGTTGTGTAGAAAGTTGATTATTCTTTCTATTCAGCA
AATTCGCGATCAGAAGTTAGATCGTACTTTAAGAAAGCTAAATAGATTAAAGGATTTACCCAATTTAACAATCAAGCACG
AAAGAGCTCTAATAAAAGCTGGCATTGCTGATGTTGCTATGCTAAGAGAAATTGGTGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGCGGAAGTGGAGCAACTTTAGATTTTTATTGGAAGTTAGTATGTGCTTTGCAAAATAAAAATAGTCAATTTTT
AAGTCAATCGGAAAAAGAGCGTTTATTGAAGAAGTTAAACGAAGTTTTGAGAAAGAATGGTTTAAAAGGTTATAGAAAAT
TAGATGACGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(15-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

89.862

100

0.899

Multiple sequence alignment