Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV365_RS06405 Genome accession   NZ_CP031237
Coordinates   1306997..1307344 (-) Length   115 a.a.
NCBI ID   WP_005693346.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M12125     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1301997..1312344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV365_RS06380 otnI 1302464..1303240 (-) 777 WP_114890528.1 2-oxo-tetronate isomerase -
  DV365_RS06385 otnC 1303243..1303875 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  DV365_RS06390 otnK 1303872..1305113 (-) 1242 WP_114890529.1 3-oxo-tetronate kinase -
  DV365_RS06395 ltnD 1305116..1306021 (-) 906 WP_114890530.1 L-threonate dehydrogenase -
  DV365_RS06400 - 1306192..1306950 (+) 759 WP_042611123.1 DeoR/GlpR family DNA-binding transcription regulator -
  DV365_RS06405 comE1/comEA 1306997..1307344 (-) 348 WP_005693346.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV365_RS06410 ispH 1307513..1308457 (-) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV365_RS06415 lspA 1308454..1308969 (-) 516 WP_005664259.1 signal peptidase II -
  DV365_RS06420 - 1309039..1310583 (-) 1545 WP_114890531.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12355.16 Da        Isoelectric Point: 8.0085

>NTDB_id=304367 DV365_RS06405 WP_005693346.1 1306997..1307344(-) (comE1/comEA) [Haemophilus influenzae strain M12125]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304367 DV365_RS06405 WP_005693346.1 1306997..1307344(-) (comE1/comEA) [Haemophilus influenzae strain M12125]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

98.214

97.391

0.957
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment