Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV400_RS07510 Genome accession   NZ_CP031236
Coordinates   1513635..1513982 (-) Length   115 a.a.
NCBI ID   WP_050948644.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25267     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508635..1518982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV400_RS07490 bioB 1509024..1510025 (-) 1002 WP_014550962.1 biotin synthase BioB -
  DV400_RS07495 thiQ 1510138..1510785 (-) 648 WP_005669738.1 thiamine ABC transporter ATP-binding protein -
  DV400_RS07500 thiP 1510769..1512385 (-) 1617 WP_050948642.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DV400_RS07505 thiB 1512390..1513388 (-) 999 WP_050948643.1 thiamine ABC transporter substrate binding subunit -
  DV400_RS07510 comE1/comEA 1513635..1513982 (-) 348 WP_050948644.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV400_RS07515 ispH 1514151..1515095 (-) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV400_RS07520 lspA 1515092..1515607 (-) 516 WP_050948645.1 signal peptidase II -
  DV400_RS07525 - 1515677..1517236 (-) 1560 WP_050948646.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12430.35 Da        Isoelectric Point: 9.0428

>NTDB_id=304334 DV400_RS07510 WP_050948644.1 1513635..1513982(-) (comE1/comEA) [Haemophilus influenzae strain M25267]
MKLMKTLFTSVVLCGSLAAGSTFAENKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304334 DV400_RS07510 WP_050948644.1 1513635..1513982(-) (comE1/comEA) [Haemophilus influenzae strain M25267]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAAACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

82.143

97.391

0.8
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.574
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment