Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DVH14_RS09355 Genome accession   NZ_CP031231
Coordinates   1937398..1938027 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Es_ST410_NW1_NDM_09_2017     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932398..1943027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVH14_RS09335 (DVH14_09935) ycbZ 1932787..1934547 (-) 1761 WP_000156526.1 Lon protease family protein -
  DVH14_RS09340 (DVH14_09940) matP 1934733..1935185 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DVH14_RS09345 (DVH14_09945) ompA 1935261..1936313 (-) 1053 WP_001361736.1 porin OmpA -
  DVH14_RS09350 (DVH14_09955) sulA 1936670..1937179 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DVH14_RS09355 (DVH14_09960) sxy/tfoX 1937398..1938027 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DVH14_RS09360 (DVH14_09965) yccS 1937990..1940152 (-) 2163 WP_000875023.1 YccS family putative transporter -
  DVH14_RS09365 (DVH14_09970) yccF 1940162..1940608 (-) 447 WP_001261235.1 YccF domain-containing protein -
  DVH14_RS09370 (DVH14_09975) helD 1940731..1942785 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=304297 DVH14_RS09355 WP_000839153.1 1937398..1938027(+) (sxy/tfoX) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=304297 DVH14_RS09355 WP_000839153.1 1937398..1938027(+) (sxy/tfoX) [Escherichia coli strain Es_ST410_NW1_NDM_09_2017]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment