Detailed information NTG0304248

Bioinformatically predicted

Overview

• Name: uvrB
• Type: Machinery gene
• Locus tag: EPB54_RS11770
• Genome accession: NZ_CP035701
• Coordinates: 2312797..2314827 (-)
• Length: 676 a.a.
• NCBI ID: WP_005494496.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2012AW-0154
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2307797..2319827

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB54_RS11745	moaB	2307894..2308406 (-)	513	WP_025546080.1	molybdenum cofactor biosynthesis protein B	-
EPB54_RS11750	moaA	2308508..2309497 (-)	990	WP_005461510.1	GTP 3',8-cyclase MoaA	-
EPB54_RS11755	-	2309793..2310686 (+)	894	WP_005494500.1	YvcK family protein	-
EPB54_RS11760	luxU	2310763..2311101 (-)	339	WP_015297057.1	quorum-sensing phosphorelay protein LuxU	-
EPB54_RS11765	luxO	2311104..2312507 (-)	1404	WP_005461534.1	quorum-sensing sigma-54 dependent transcriptional regulator LuxO	Regulator
EPB54_RS11770	uvrB	2312797..2314827 (-)	2031	WP_005494496.1	excinuclease ABC subunit UvrB	Machinery gene
EPB54_RS11785	rsxA	2315817..2316395 (+)	579	WP_005380762.1	electron transport complex subunit RsxA	-
EPB54_RS11790	rsxB	2316399..2316995 (+)	597	WP_005480813.1	electron transport complex subunit RsxB	-
EPB54_RS11795	rsxC	2317004..2319499 (+)	2496	WP_062905500.1	electron transport complex subunit RsxC	-

Sequence

Protein

• Length: 676 a.a.
• Molecular weight: 77042.72 Da
• Isoelectric Point: 4.8615

>NTDB_id=304248 EPB54_RS11770 WP_005494496.1 2312797..2314827(-) (uvrB) [Vibrio parahaemolyticus strain 2012AW-0154]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide

• Length: 2031 bp

>NTDB_id=304248 EPB54_RS11770 WP_005494496.1 2312797..2314827(-) (uvrB) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGAGTAAAGTTTATGAACTGGTCTCTGAGTATCAACCATCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAAGG
CTTAGATGCGGGGTTGGCGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGTCCTGCAATTTTACTGGCGCCAAATAAAACCCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCTTACTACGACTACTACCAACCAGAAGCGTACGTACCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGTTTGTCTGCCACCAAAGCTTTACTAGAACGAA
AAGATGCCATCATCGTCGCTTCTGTCTCGGCCATCTATGGTTTGGGTGATCCAGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGACATGCTTCGTCGCCTAGCGGAACTCCAATACTCGCGTAATGATGTCGC
TTTTGAACGCGGTCAGTTCCGTGTTCGCGGCGAAGTGATTGACATATTCCCAGCCGAGTCTGACCAAGATGCTGTGCGCG
TTGAAATGTTTGATGATGAAGTGGATTGCATCAGTGTGTTCGACCCATTGACGGGTGTCGTGAAACAAAGAGATTTGCCA
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGTATTCTCGAAGCGATAGAAAGCATCAAAGTTGA
GCTCGAAGTACGCAAGAAACAATTACTAGAGAATAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTCGGTTTCTGCTCTGGTATCGAAAACTACTCACGTTATCTCAGTGGTCGTTCTGAGGGT
GAGCCGCCTCCAACCTTGTTCGATTACTTGCCTCATGATGGTTTGCTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGTCCTCTAAAATTTGAAGAATTTGAGTCTCTTGCTCCGCAAACTATTTTCGTCTCGGCAACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGGTGAAATTGCGGATCAAGTCGTGCGTCCTACCGGCTTGCTGGATCCAATACTCGAAGTTCG
ACCAGTCGCGACTCAGGTCGATGATCTATTGTCTGAAATTCGTATTCGTGCCGCCAAAGAGGAACGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAACATGATGTTCGTGTTCGATATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTGCGCTTAGGTGAGTTCGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGCTGGTGGCAATTTTGGATGCCGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCACGAAACATTGAGGGTAAAGCGATTCTCTATGCGGATAGCATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACCAATCGTCGTCGTGAGAAGCAGCAAGCGTACAACGAGAAAATGGGCATTACGCC
GCAAGCGTTAAAACGTAATATCAAGGATATTATGGAATTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTGCCACTGTCTAAAGTGGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCGGCGATGTACCAACATGCTCAGGATCTGGAATTCGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

• Ultra-violet resistance protein B (UvrB) (553-594)

• UvrB interaction domain (UvrB_inter) (159-250)

• Helicase conserved C-terminal domain (Helicase_C) (440-545)

• Type III restriction enzyme, res subunit (ResIII) (13-129)

• UvrB/uvrC motif (UVR) (636-671)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
uvrB	Streptococcus pneumoniae TIGR4	55.856	98.521	0.55
uvrB	Streptococcus pneumoniae R6	55.856	98.521	0.55
uvrB	Streptococcus pneumoniae D39	55.856	98.521	0.55