Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HYN46_RS15845 Genome accession   NZ_CP031222
Coordinates   3501497..3503008 (-) Length   503 a.a.
NCBI ID   WP_114900292.1    Uniprot ID   A0A345PA75
Organism   Aquirhabdus parva strain HYN0046     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3496497..3508008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN46_RS15830 (HYN46_15830) gpmI 3497581..3499176 (+) 1596 WP_114900289.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  HYN46_RS15835 (HYN46_15835) - 3499371..3500885 (+) 1515 WP_114900290.1 S41 family peptidase -
  HYN46_RS15840 (HYN46_15840) - 3500929..3501522 (-) 594 WP_114900291.1 hypothetical protein -
  HYN46_RS15845 (HYN46_15845) pilR 3501497..3503008 (-) 1512 WP_114900292.1 sigma-54 dependent transcriptional regulator Regulator
  HYN46_RS15850 (HYN46_15850) rsmH 3503391..3504362 (+) 972 WP_114900293.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  HYN46_RS15855 (HYN46_15855) - 3504359..3504844 (+) 486 WP_228254833.1 cell division protein FtsL -
  HYN46_RS15860 (HYN46_15860) - 3504841..3506676 (+) 1836 WP_114900294.1 penicillin-binding protein 2 -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54752.95 Da        Isoelectric Point: 5.1341

>NTDB_id=304175 HYN46_RS15845 WP_114900292.1 3501497..3503008(-) (pilR) [Aquirhabdus parva strain HYN0046]
MTRPIALIVDDEEDLLTLMRLTLLRMGVDAETASTLKDAQRLLKKQSFDFCLTDLNLPDGSGLSLVSDVARDYPNMPIAV
ITAYGSMDVAIDALKKGAFDFVSKPVELARLRVLVERALQVNAPSAAANEEAQLSESLLIGKAPVMLALRTTLTKLARSQ
APVYISGESGTGKEVVARLIHLLSPRSSGPFIPVNCGAIPAELMESEFFGHKKGSFTGATEDKLGLFQSANGGTLFLDEV
ADLPLAMQVKLLRAIQEKKVRPIGTQTEVSVDIRLLSATHKNLQAQVNAGGFRQDLFYRINVIEVQVPPLRDRGDDILLL
ADTFLQRLCADWGITPPKISKAAQQQLLTYAFPGNVRELQNTLERALTLCDDGMILPEHLKLNAAYQLADTGRVSDVSDS
YISNLSSLSQVSTGNAVYGSVPAAAISAIPSLKNLPPEGLEVYLQDIERHIIQQALDASLWNRTAAAKKLGMSFRSLRYR
LKKLGLGTDLDKDDIDDEEIQSA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=304175 HYN46_RS15845 WP_114900292.1 3501497..3503008(-) (pilR) [Aquirhabdus parva strain HYN0046]
GTGACACGTCCTATAGCGCTGATTGTTGATGATGAAGAAGATTTGCTGACGCTGATGCGCTTGACCTTACTGCGCATGGG
TGTCGATGCAGAGACGGCATCGACCTTGAAAGATGCCCAACGCTTATTGAAAAAACAGAGTTTTGATTTCTGTCTCACCG
ATTTGAATTTGCCTGATGGCAGTGGCCTCAGTCTGGTCAGTGACGTTGCGCGTGATTATCCCAATATGCCGATTGCTGTG
ATTACCGCCTATGGCAGTATGGATGTAGCGATTGATGCCTTGAAAAAAGGTGCATTTGATTTTGTCAGCAAGCCGGTGGA
ATTGGCGCGGTTGCGTGTGTTGGTCGAACGGGCATTGCAAGTTAATGCGCCGTCAGCTGCGGCCAATGAAGAAGCGCAAC
TCAGTGAGAGTTTGCTGATCGGTAAGGCGCCGGTCATGCTGGCTCTGCGCACTACTCTAACCAAGCTGGCCCGTTCACAG
GCACCCGTCTATATCAGTGGGGAGTCGGGAACGGGTAAAGAAGTGGTTGCGCGCCTGATTCATCTACTCAGTCCACGTAG
TAGCGGTCCTTTTATCCCCGTGAACTGCGGTGCGATCCCTGCAGAGCTGATGGAAAGCGAATTTTTTGGTCATAAGAAGG
GCAGCTTTACTGGCGCGACTGAAGATAAACTCGGTCTGTTTCAATCGGCCAATGGCGGCACTTTGTTTCTGGACGAAGTT
GCCGATCTGCCTCTGGCGATGCAGGTCAAGTTGCTGCGTGCTATTCAAGAGAAGAAAGTCCGTCCGATCGGTACCCAGAC
CGAAGTTTCGGTTGATATCCGTTTATTGAGTGCCACGCATAAGAACTTACAAGCACAGGTCAATGCAGGCGGCTTCCGTC
AGGATTTGTTCTATCGGATTAATGTTATTGAAGTTCAAGTTCCGCCACTGCGAGATCGTGGCGACGATATCTTGCTACTT
GCAGATACCTTCTTACAGCGTTTATGTGCAGACTGGGGCATTACCCCGCCCAAAATTTCCAAAGCCGCACAACAGCAATT
ACTGACCTATGCCTTTCCGGGCAATGTGCGTGAACTGCAAAATACGCTGGAGCGCGCACTGACGTTATGTGATGACGGTA
TGATTTTGCCTGAGCATTTGAAATTGAATGCCGCGTATCAGTTGGCTGACACTGGGCGCGTTTCCGATGTAAGTGATTCC
TATATTTCGAATCTATCGAGTCTCAGTCAGGTATCAACGGGCAATGCGGTCTACGGCAGTGTGCCTGCCGCCGCGATTTC
CGCGATCCCATCGTTAAAAAATCTGCCGCCGGAAGGTCTCGAGGTTTATCTGCAAGATATAGAGCGCCATATTATTCAGC
AGGCGCTGGATGCCAGTTTGTGGAATCGAACCGCCGCAGCCAAAAAGCTGGGCATGTCTTTCCGGTCACTACGCTACCGG
TTGAAAAAGCTGGGTCTGGGCACGGATCTTGATAAAGACGATATCGATGACGAAGAAATCCAAAGCGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(444-484)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(139-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345PA75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.79

96.62

0.549
  pilR Acinetobacter baumannii strain A118

53.157

97.614

0.519

Multiple sequence alignment