Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EQO00_RS01955 Genome accession   NZ_CP035498
Coordinates   414689..415321 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 04-00955     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 409689..420321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQO00_RS01930 (EQO00_01930) yhfG 409810..409977 (+) 168 WP_000736858.1 YhfG family protein -
  EQO00_RS01935 (EQO00_01935) fic 409967..410569 (+) 603 WP_001280638.1 putative adenosine monophosphate-protein transferase Fic -
  EQO00_RS01940 (EQO00_01940) pabA 410601..411164 (+) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  EQO00_RS01945 (EQO00_01945) argD 411250..412470 (+) 1221 WP_000963799.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  EQO00_RS01950 (EQO00_01950) yhfK 412548..414638 (-) 2091 WP_001298205.1 YccS/YhfK family putative transporter -
  EQO00_RS01955 (EQO00_01955) crp 414689..415321 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  EQO00_RS01960 (EQO00_01960) yhfA 415623..416027 (+) 405 WP_001148908.1 OsmC family protein -
  EQO00_RS01965 (EQO00_01965) prkB 416082..416951 (-) 870 WP_001274684.1 phosphoribulokinase -
  EQO00_RS01970 (EQO00_01970) yheU 417005..417223 (-) 219 WP_000907085.1 YheU family protein -
  EQO00_RS01975 (EQO00_01975) yheT 417217..418239 (-) 1023 WP_000057391.1 hydrolase -
  EQO00_RS01980 (EQO00_01980) yheS 418239..420152 (-) 1914 WP_000634780.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=303876 EQO00_RS01955 WP_000242755.1 414689..415321(-) (crp) [Escherichia coli strain 04-00955]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=303876 EQO00_RS01955 WP_000242755.1 414689..415321(-) (crp) [Escherichia coli strain 04-00955]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTCTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467