Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | BLDA23_RS20535 | Genome accession | NZ_CP031126 |
| Coordinates | 3898186..3898533 (-) | Length | 115 a.a. |
| NCBI ID | WP_003185893.1 | Uniprot ID | A0AB37GL97 |
| Organism | Bacillus licheniformis strain 0DA23-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3893186..3903533
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLDA23_RS20505 (BLDA23_20505) | srlD | 3893796..3894581 (-) | 786 | WP_003185881.1 | sorbitol-6-phosphate dehydrogenase | - |
| BLDA23_RS20510 (BLDA23_20510) | - | 3894596..3894967 (-) | 372 | WP_003185882.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| BLDA23_RS20515 (BLDA23_20515) | - | 3894992..3895999 (-) | 1008 | WP_003185884.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| BLDA23_RS20520 (BLDA23_20520) | - | 3896017..3896565 (-) | 549 | WP_003185886.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| BLDA23_RS20525 (BLDA23_20525) | - | 3896562..3897005 (-) | 444 | WP_003185888.1 | transcriptional regulator GutM | - |
| BLDA23_RS20530 (BLDA23_20530) | - | 3897002..3897964 (-) | 963 | WP_003185891.1 | sugar-binding transcriptional regulator | - |
| BLDA23_RS20535 (BLDA23_20535) | ssbB | 3898186..3898533 (-) | 348 | WP_003185893.1 | single-stranded DNA-binding protein | Machinery gene |
| BLDA23_RS20540 (BLDA23_20540) | - | 3898639..3899010 (-) | 372 | WP_003185895.1 | hypothetical protein | - |
| BLDA23_RS20545 (BLDA23_20545) | - | 3899192..3899605 (+) | 414 | WP_003185898.1 | YwpF-like family protein | - |
| BLDA23_RS20550 (BLDA23_20550) | mscL | 3899646..3900026 (-) | 381 | WP_003185900.1 | large conductance mechanosensitive channel protein MscL | - |
| BLDA23_RS20555 (BLDA23_20555) | fabZ | 3900096..3900530 (-) | 435 | WP_003185902.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| BLDA23_RS20560 (BLDA23_20560) | - | 3900724..3901551 (-) | 828 | WP_003185904.1 | flagellar hook-basal body protein | - |
| BLDA23_RS20565 (BLDA23_20565) | - | 3901595..3902434 (-) | 840 | WP_003185907.1 | flagellar hook-basal body protein | - |
Sequence
Protein
Download Length: 115 a.a. Molecular weight: 12753.44 Da Isoelectric Point: 6.9538
>NTDB_id=303571 BLDA23_RS20535 WP_003185893.1 3898186..3898533(-) (ssbB) [Bacillus licheniformis strain 0DA23-1]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEVEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERTFITEVVARSVRFLGESRKAHEPADA
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEVEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERTFITEVVARSVRFLGESRKAHEPADA
Nucleotide
Download Length: 348 bp
>NTDB_id=303571 BLDA23_RS20535 WP_003185893.1 3898186..3898533(-) (ssbB) [Bacillus licheniformis strain 0DA23-1]
ATGTTTAATGAGATCATGCTCGTCGGGCGTTTGACAAAAGATCCCGAACTGCGGTATACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAGAACGCAGCAGGCGAAGTAGAAGCGGACTTTGTCAATTGCACTCTAT
GGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACCCGC
CAATACGTCAATTCAGAAGGCGAACGCACCTTTATTACAGAAGTTGTCGCCCGGTCAGTCAGATTTTTGGGAGAAAGCCG
GAAAGCGCATGAGCCGGCTGATGCTTAA
ATGTTTAATGAGATCATGCTCGTCGGGCGTTTGACAAAAGATCCCGAACTGCGGTATACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAGAACGCAGCAGGCGAAGTAGAAGCGGACTTTGTCAATTGCACTCTAT
GGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACCCGC
CAATACGTCAATTCAGAAGGCGAACGCACCTTTATTACAGAAGTTGTCGCCCGGTCAGTCAGATTTTTGGGAGAAAGCCG
GAAAGCGCATGAGCCGGCTGATGCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
70.874 |
89.565 |
0.635 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.223 |
89.565 |
0.53 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.351 |
96.522 |
0.496 |
| ssbA | Streptococcus mutans UA159 |
45.794 |
93.043 |
0.426 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
44.34 |
92.174 |
0.409 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.925 |
93.043 |
0.409 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.991 |
93.043 |
0.4 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.991 |
93.043 |
0.4 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.056 |
93.043 |
0.391 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.056 |
93.043 |
0.391 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.056 |
93.043 |
0.391 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.056 |
93.043 |
0.391 |