Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   soil367_RS01260 Genome accession   NZ_CP031093
Coordinates   275729..276118 (-) Length   129 a.a.
NCBI ID   WP_136546147.1    Uniprot ID   A0A4P7XF21
Organism   Hydrocarboniclastica marina strain soil36-7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 270729..281118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  soil367_RS01240 (soil367_01245) - 271357..272247 (-) 891 WP_136546139.1 CheR family methyltransferase -
  soil367_RS01245 (soil367_01250) - 272310..274394 (-) 2085 WP_136546141.1 methyl-accepting chemotaxis protein -
  soil367_RS01250 (soil367_01255) - 274711..275256 (-) 546 WP_136546143.1 chemotaxis protein CheW -
  soil367_RS01255 (soil367_01260) pilH 275295..275657 (-) 363 WP_136546145.1 twitching motility response regulator PilH -
  soil367_RS01260 (soil367_01265) pilG 275729..276118 (-) 390 WP_136546147.1 twitching motility response regulator PilG Regulator
  soil367_RS01265 (soil367_01270) gshB 276712..277668 (+) 957 WP_136546149.1 glutathione synthase -
  soil367_RS01270 (soil367_01275) - 277797..278657 (+) 861 WP_136546151.1 energy transducer TonB -
  soil367_RS01275 (soil367_01280) - 278792..279367 (+) 576 WP_136546153.1 YqgE/AlgH family protein -
  soil367_RS01280 (soil367_01285) ruvX 279360..279833 (+) 474 WP_136546155.1 Holliday junction resolvase RuvX -
  soil367_RS01285 (soil367_01290) pyrR 280126..280656 (+) 531 WP_136546157.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14425.65 Da        Isoelectric Point: 6.4632

>NTDB_id=303284 soil367_RS01260 WP_136546147.1 275729..276118(-) (pilG) [Hydrocarboniclastica marina strain soil36-7]
MDDNFENLKVMVIDDSKTIRRTAETLLKKVGCEVFTATDGFDALAKIADTHPDIIFVDIMMPRLDGYQTCALIKNNSAFK
GTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKDELLNTIREHVPARQ

Nucleotide


Download         Length: 390 bp        

>NTDB_id=303284 soil367_RS01260 WP_136546147.1 275729..276118(-) (pilG) [Hydrocarboniclastica marina strain soil36-7]
ATGGATGACAACTTCGAAAACCTGAAAGTCATGGTTATAGACGATAGCAAGACCATTCGTCGCACCGCTGAAACTCTGCT
AAAAAAAGTTGGCTGTGAAGTTTTTACGGCCACGGATGGGTTCGACGCTCTTGCCAAGATCGCGGACACACACCCCGATA
TCATTTTCGTCGACATCATGATGCCACGGCTTGATGGTTATCAGACCTGTGCGCTGATCAAGAATAATTCAGCCTTCAAA
GGAACACCCGTCATCATGCTTTCAAGCAAGGATGGCCTGTTCGATAAAGCGAAAGGCCGAATTGTAGGTTCTGATCAGTA
TCTGACGAAGCCCTTCAGCAAAGACGAACTCTTGAACACAATCCGGGAGCACGTGCCCGCCCGGCAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7XF21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.953

98.45

0.767
  vicR Streptococcus mutans UA159

41.88

90.698

0.38
  pilH Synechocystis sp. PCC 6803

41.228

88.372

0.364

Multiple sequence alignment