Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DT065_RS06840 Genome accession   NZ_CP031092
Coordinates   1358309..1359262 (-) Length   317 a.a.
NCBI ID   WP_114371946.1    Uniprot ID   A0A345BXT7
Organism   Salicibibacter kimchii strain NKC1-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1353309..1364262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT065_RS06820 (DT065_06820) - 1353842..1355713 (-) 1872 WP_114371940.1 ABC-F family ATP-binding cassette domain-containing protein -
  DT065_RS06830 (DT065_06830) - 1356557..1357315 (-) 759 WP_114376135.1 ABC transporter ATP-binding protein -
  DT065_RS06835 (DT065_06835) - 1357366..1358319 (-) 954 WP_114371944.1 iron chelate uptake ABC transporter family permease subunit -
  DT065_RS06840 (DT065_06840) ceuB 1358309..1359262 (-) 954 WP_114371946.1 ABC transporter permease Machinery gene
  DT065_RS06845 (DT065_06845) - 1359628..1360584 (-) 957 WP_114371948.1 hypothetical protein -
  DT065_RS18820 - 1360731..1360898 (-) 168 WP_160112441.1 hypothetical protein -
  DT065_RS06850 (DT065_06850) - 1361306..1361728 (-) 423 WP_114371950.1 organic hydroperoxide resistance protein -
  DT065_RS06855 (DT065_06855) - 1361893..1362348 (+) 456 WP_114371952.1 DUF4064 domain-containing protein -
  DT065_RS06860 (DT065_06860) - 1362461..1363621 (-) 1161 WP_114371954.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34940.04 Da        Isoelectric Point: 9.6342

>NTDB_id=303261 DT065_RS06840 WP_114371946.1 1358309..1359262(-) (ceuB) [Salicibibacter kimchii strain NKC1-1]
MRIKYLLPLLIVLSVASLFIGVQEISPTDIFNLQDEQVQTILISRIPRLMSIIIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTLDWARLGILVSILVFSQAGTLERMFVAILFALGGTFLFMKILERIRYKNVIFVPLVGLMLGSVVEAITTFFAYQYDLM
QSLSSWMQGSFSLVIRGNYEILYIGIPLVIIAFLFANRFTVAGMGRDFSANLGMNYNRIMNAGLFIVAIITATIVVTIGS
IPFLGLIIPNIVSIMRGDNLKNSLPYTALFGAIFLLACDILGRVIIYPYEIPIGLMVGIIGSAIFLYLLLRRNANAG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=303261 DT065_RS06840 WP_114371946.1 1358309..1359262(-) (ceuB) [Salicibibacter kimchii strain NKC1-1]
ATGAGAATAAAATACTTACTGCCACTGCTCATTGTTTTATCGGTAGCATCACTATTTATCGGCGTGCAGGAGATATCACC
GACCGACATATTTAACCTTCAAGACGAACAGGTTCAAACCATTCTTATCAGTCGAATTCCGCGATTGATGAGTATTATTA
TCGTCGGTGTAAGCTTGAGTGTTTGCGGGCTGATCATGCAGCAGCTCACACAAAACAAATTCGTTTCTCCCACGACTGCC
GGAACGTTGGATTGGGCGCGACTCGGTATTCTCGTCTCGATCCTGGTGTTTTCGCAAGCGGGTACGTTGGAGCGAATGTT
CGTTGCTATATTGTTTGCCCTCGGCGGTACCTTCCTTTTCATGAAGATCTTGGAACGTATCCGTTATAAAAATGTGATCT
TTGTCCCGCTTGTCGGTTTGATGCTCGGGAGCGTTGTTGAAGCGATCACGACATTTTTTGCCTATCAATATGATTTGATG
CAAAGCCTTTCTTCCTGGATGCAAGGAAGCTTTTCGCTTGTCATCAGGGGAAACTATGAGATTTTGTATATCGGTATCCC
GCTTGTCATCATTGCCTTTTTATTCGCCAATCGTTTTACGGTTGCCGGGATGGGGCGAGATTTTTCCGCCAATTTGGGGA
TGAATTACAATCGGATTATGAACGCCGGGCTATTTATCGTGGCGATTATTACGGCAACGATTGTCGTTACGATCGGCTCG
ATTCCGTTTTTGGGGTTAATCATTCCGAATATCGTATCAATCATGAGAGGCGACAATCTAAAGAACAGTCTTCCCTATAC
GGCTTTATTCGGAGCCATCTTTTTATTGGCCTGCGATATATTGGGAAGGGTTATTATCTATCCGTATGAGATACCGATCG
GACTTATGGTGGGCATCATTGGCAGCGCCATATTTCTTTACCTTCTCTTAAGGAGAAACGCCAATGCAGGCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345BXT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

99.685

0.524

Multiple sequence alignment