Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ETT50_RS02640 Genome accession   NZ_CP035449
Coordinates   505656..506321 (+) Length   221 a.a.
NCBI ID   WP_002983685.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm56     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 500656..511321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT50_RS02615 (ETT50_02615) - 500807..502207 (+) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ETT50_RS02620 (ETT50_02620) - 502207..502584 (+) 378 WP_030126860.1 S1 RNA-binding domain-containing protein -
  ETT50_RS02625 (ETT50_02625) cysK 502602..503543 (-) 942 WP_032465158.1 cysteine synthase A -
  ETT50_RS02630 (ETT50_02630) - 503671..504303 (-) 633 WP_009880468.1 YigZ family protein -
  ETT50_RS02635 (ETT50_02635) comFA/cflA 504359..505684 (+) 1326 WP_032465157.1 DEAD/DEAH box helicase Machinery gene
  ETT50_RS02640 (ETT50_02640) comFC/cflB 505656..506321 (+) 666 WP_002983685.1 ComF family protein Machinery gene
  ETT50_RS02645 (ETT50_02645) hpf 506401..506949 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25163.41 Da        Isoelectric Point: 9.4626

>NTDB_id=302973 ETT50_RS02640 WP_002983685.1 505656..506321(+) (comFC/cflB) [Streptococcus pyogenes strain emm56]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=302973 ETT50_RS02640 WP_002983685.1 505656..506321(+) (comFC/cflB) [Streptococcus pyogenes strain emm56]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTCAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412

Multiple sequence alignment