Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DUN60_RS12900 Genome accession   NZ_CP031055
Coordinates   2886105..2886737 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio splendidus strain Vibrio sp     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2881105..2891737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DUN60_RS12880 - 2882867..2883337 (+) 471 WP_004729647.1 TIGR02444 family protein -
  DUN60_RS12885 - 2883614..2884606 (+) 993 WP_102441707.1 hydrolase -
  DUN60_RS12890 - 2884706..2884918 (+) 213 WP_004729649.1 YheU family protein -
  DUN60_RS12895 - 2884996..2885865 (+) 870 WP_004729650.1 phosphoribulokinase -
  DUN60_RS12900 crp 2886105..2886737 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  DUN60_RS12905 - 2886922..2887713 (-) 792 WP_004729652.1 DUF1338 domain-containing protein -
  DUN60_RS12910 astD 2887971..2889428 (-) 1458 WP_114634061.1 succinylglutamate-semialdehyde dehydrogenase -
  DUN60_RS12915 astA 2889468..2890487 (-) 1020 WP_102575424.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=302973 DUN60_RS12900 WP_004729651.1 2886105..2886737(+) (crp) [Vibrio splendidus strain Vibrio sp]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=302973 DUN60_RS12900 WP_004729651.1 2886105..2886737(+) (crp) [Vibrio splendidus strain Vibrio sp]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATTGGTGAACTTGGCCTCTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTGGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATTGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment