Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DTO64_RS02295 Genome accession   NZ_CP031027
Coordinates   427462..427935 (+) Length   157 a.a.
NCBI ID   WP_114679333.1    Uniprot ID   -
Organism   Enterococcus faecalis strain TY1 isolate flatfish     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 422462..432935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DTO64_RS02270 (DTO64_02270) - 425854..426120 (+) 267 WP_002358475.1 hypothetical protein -
  DTO64_RS02275 (DTO64_02275) - 426135..426524 (+) 390 WP_002358476.1 hypothetical protein -
  DTO64_RS02280 (DTO64_02280) - 426542..426877 (+) 336 WP_002358477.1 thioredoxin fold domain-containing protein -
  DTO64_RS02285 (DTO64_02285) - 426881..427294 (+) 414 WP_002358478.1 hypothetical protein -
  DTO64_RS02290 (DTO64_02290) - 427296..427454 (+) 159 WP_023894690.1 hypothetical protein -
  DTO64_RS02295 (DTO64_02295) ssb 427462..427935 (+) 474 WP_114679333.1 single-stranded DNA-binding protein Machinery gene
  DTO64_RS02300 (DTO64_02300) - 427968..428390 (+) 423 WP_002358479.1 hypothetical protein -
  DTO64_RS02305 (DTO64_02305) - 428383..428772 (+) 390 WP_010706731.1 hypothetical protein -
  DTO64_RS02310 (DTO64_02310) - 428866..430095 (+) 1230 WP_002358481.1 hypothetical protein -
  DTO64_RS02315 (DTO64_02315) cylR2 430632..430832 (-) 201 WP_002358483.1 cytolysin regulator CylR2 -
  DTO64_RS02325 (DTO64_02325) cylL-L 431236..431442 (+) 207 WP_002358485.1 lanthipeptide cytolysin subunit CylL-L -
  DTO64_RS02330 (DTO64_02330) cylL-S 431476..431667 (+) 192 WP_002358181.1 lanthipeptide cytolysin subunit CylL-S -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17472.31 Da        Isoelectric Point: 4.9163

>NTDB_id=302887 DTO64_RS02295 WP_114679333.1 427462..427935(+) (ssb) [Enterococcus faecalis strain TY1 isolate flatfish]
MINNVTLVGRLANDVDLRYTSSGIAVGQFRLAVNRNFTNQSGEREADFISCAIWRKAAESLANYAHKGSLLGITGRIQTR
NYDNQQGQRVYVTEVIVENFQLLESKEISEQRRANASTPVTNGQQANNQQQTPLPDPLDPFSKESSPVNISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=302887 DTO64_RS02295 WP_114679333.1 427462..427935(+) (ssb) [Enterococcus faecalis strain TY1 isolate flatfish]
ATGATTAATAATGTTACGTTAGTTGGGCGTTTAGCTAATGATGTGGATTTAAGGTATACATCAAGTGGGATTGCAGTTGG
ACAATTTCGTTTAGCAGTCAATCGGAATTTTACCAATCAATCTGGGGAGCGAGAAGCGGATTTTATTAGTTGTGCGATAT
GGCGCAAAGCGGCAGAATCGCTTGCTAATTACGCACATAAAGGTAGCTTACTTGGAATTACTGGTCGTATTCAGACGCGA
AACTATGATAACCAGCAAGGACAACGTGTTTATGTGACAGAAGTGATTGTAGAAAATTTTCAATTGTTAGAATCCAAAGA
AATAAGCGAACAACGTCGGGCGAATGCTTCTACGCCTGTAACCAATGGGCAGCAGGCTAATAACCAACAACAGACACCAC
TTCCTGATCCGCTTGATCCTTTCTCAAAGGAGTCTAGCCCAGTAAATATTTCGGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.575

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

67.516

0.382

Multiple sequence alignment