Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   DT536_RS06635 Genome accession   NZ_CP031011
Coordinates   1384801..1385229 (+) Length   142 a.a.
NCBI ID   WP_410113650.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1379801..1390229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS06625 (DT536_06625) - 1380099..1380821 (+) 723 WP_058870397.1 hypothetical protein -
  DT536_RS06630 (DT536_06630) - 1380833..1384741 (+) 3909 WP_058870396.1 PilC/PilY family type IV pilus protein -
  DT536_RS06635 (DT536_06635) pilY2 1384801..1385229 (+) 429 WP_410113650.1 type IV pilin protein Machinery gene
  DT536_RS06640 (DT536_06640) comF 1385230..1385688 (+) 459 WP_058870394.1 type IV pilin protein Machinery gene
  DT536_RS06645 (DT536_06645) rpsP 1385834..1386091 (+) 258 WP_004718284.1 30S ribosomal protein S16 -
  DT536_RS06650 (DT536_06650) rimM 1386120..1386668 (+) 549 WP_004978035.1 ribosome maturation factor RimM -
  DT536_RS06655 (DT536_06655) trmD 1386696..1387436 (+) 741 WP_005401335.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DT536_RS06660 (DT536_06660) rplS 1387577..1387951 (+) 375 WP_004691454.1 50S ribosomal protein L19 -
  DT536_RS06665 (DT536_06665) - 1388011..1388982 (-) 972 WP_058870393.1 esterase/lipase family protein -
  DT536_RS06670 (DT536_06670) - 1389155..1390108 (-) 954 WP_227509235.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15440.27 Da        Isoelectric Point: 5.1630

>NTDB_id=302841 DT536_RS06635 WP_410113650.1 1384801..1385229(+) (pilY2) [Acinetobacter johnsonii strain LXL_C1]
MVVVVIVAIFAAIAIPSYQEYVRRAAASQAQQEIQRLATLLDRHKARNFSYRGFTTTSAVLPVGATGSAIKYTLTIRDGN
DPDLELTDEDAAGRNWAIQAVSSDDKNYTMLLTSTGVRCKNKTTANVDFESCGSTANGSEEW

Nucleotide


Download         Length: 429 bp        

>NTDB_id=302841 DT536_RS06635 WP_410113650.1 1384801..1385229(+) (pilY2) [Acinetobacter johnsonii strain LXL_C1]
ATGGTTGTTGTAGTAATTGTTGCGATTTTCGCAGCAATTGCTATACCGTCATACCAAGAGTATGTACGACGCGCGGCAGC
CAGTCAGGCACAACAAGAGATACAGCGATTAGCTACTTTGTTAGATCGGCATAAAGCGCGTAATTTTAGTTATCGAGGAT
TTACGACGACAAGTGCAGTATTACCCGTGGGAGCAACTGGCTCTGCGATTAAATATACATTGACGATCAGAGATGGAAAT
GATCCAGATTTGGAGTTAACAGATGAGGATGCGGCAGGTCGGAATTGGGCAATTCAAGCTGTGAGTTCAGACGATAAAAA
TTATACGATGCTACTTACAAGTACAGGGGTGCGTTGTAAGAATAAAACTACAGCAAATGTTGATTTTGAGAGTTGTGGCA
GTACCGCGAATGGTAGTGAGGAGTGGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(16-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

47.297

100

0.493
  comE Acinetobacter baylyi ADP1

43.056

100

0.437

Multiple sequence alignment