Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   DT536_RS06640 Genome accession   NZ_CP031011
Coordinates   1385230..1385688 (+) Length   152 a.a.
NCBI ID   WP_058870394.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain LXL_C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380230..1390688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DT536_RS06630 (DT536_06630) - 1380833..1384741 (+) 3909 WP_058870396.1 PilC/PilY family type IV pilus protein -
  DT536_RS06635 (DT536_06635) pilY2 1384801..1385229 (+) 429 WP_410113650.1 type IV pilin protein Machinery gene
  DT536_RS06640 (DT536_06640) comF 1385230..1385688 (+) 459 WP_058870394.1 type IV pilin protein Machinery gene
  DT536_RS06645 (DT536_06645) rpsP 1385834..1386091 (+) 258 WP_004718284.1 30S ribosomal protein S16 -
  DT536_RS06650 (DT536_06650) rimM 1386120..1386668 (+) 549 WP_004978035.1 ribosome maturation factor RimM -
  DT536_RS06655 (DT536_06655) trmD 1386696..1387436 (+) 741 WP_005401335.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DT536_RS06660 (DT536_06660) rplS 1387577..1387951 (+) 375 WP_004691454.1 50S ribosomal protein L19 -
  DT536_RS06665 (DT536_06665) - 1388011..1388982 (-) 972 WP_058870393.1 esterase/lipase family protein -
  DT536_RS06670 (DT536_06670) - 1389155..1390108 (-) 954 WP_227509235.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16609.87 Da        Isoelectric Point: 6.4551

>NTDB_id=302842 DT536_RS06640 WP_058870394.1 1385230..1385688(+) (comF) [Acinetobacter johnsonii strain LXL_C1]
MNKGFTLIELMIVVAIIGILAAIAYPSYQEHVRKTKRVEAQAELVALANQIQRYKVSNFRFLLANGNPITLGTLGYTLNA
NNNLEIPQDSDPLYEVSLTNVAANTWTLTATPIDGTLQENDGVSILNHRGEKCWTKGASTCALSGTSNWDGR

Nucleotide


Download         Length: 459 bp        

>NTDB_id=302842 DT536_RS06640 WP_058870394.1 1385230..1385688(+) (comF) [Acinetobacter johnsonii strain LXL_C1]
ATGAATAAAGGATTTACGCTTATTGAACTTATGATTGTAGTTGCAATTATTGGTATCTTGGCTGCTATCGCCTATCCATC
TTATCAAGAGCATGTACGAAAAACAAAGCGTGTAGAAGCTCAGGCTGAACTGGTTGCTCTAGCTAACCAAATTCAGCGTT
ATAAAGTATCCAACTTTAGGTTTTTATTGGCGAATGGTAACCCGATCACATTGGGAACATTAGGTTATACACTCAATGCA
AACAATAATCTTGAAATTCCTCAAGATAGTGATCCATTGTATGAAGTATCTTTAACAAATGTTGCAGCAAATACATGGAC
ATTAACAGCCACTCCTATTGATGGAACCCTTCAGGAAAATGATGGGGTTAGTATTTTAAATCACCGCGGAGAAAAATGCT
GGACCAAAGGTGCATCGACTTGTGCCCTAAGTGGCACATCCAACTGGGACGGCAGATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-118)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

45.625

100

0.48
  pilE Acinetobacter baumannii D1279779

42.953

98.026

0.421

Multiple sequence alignment