Detailed information NTG0302823

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DT536_RS03140
• Genome accession: NZ_CP031011
• Coordinates: 654655..655515 (+)
• Length: 286 a.a.
• NCBI ID: WP_058868793.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain LXL_C1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 649655..660515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DT536_RS03120 (DT536_03120)	secG	650272..650601 (-)	330	WP_058868796.1	preprotein translocase subunit SecG	-
DT536_RS03125 (DT536_03125)	tpiA	650615..651406 (-)	792	WP_058868795.1	triose-phosphate isomerase	-
DT536_RS03130 (DT536_03130)	pilB	651686..653398 (+)	1713	WP_114392504.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DT536_RS03135 (DT536_03135)	pilC	653429..654655 (+)	1227	WP_010325767.1	type II secretion system F family protein	Machinery gene
DT536_RS03140 (DT536_03140)	pilD	654655..655515 (+)	861	WP_058868793.1	prepilin peptidase	Machinery gene
DT536_RS03145 (DT536_03145)	coaE	655524..656123 (+)	600	WP_058868792.1	dephospho-CoA kinase	-
DT536_RS03150 (DT536_03150)	-	656137..657054 (-)	918	WP_058868791.1	DMT family transporter	-
DT536_RS03155 (DT536_03155)	rlmB	657087..657836 (-)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
DT536_RS03160 (DT536_03160)	-	657979..658302 (-)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
DT536_RS03165 (DT536_03165)	recN	658695..660356 (+)	1662	WP_058868790.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32001.45 Da
• Isoelectric Point: 8.0564

>NTDB_id=302823 DT536_RS03140 WP_058868793.1 654655..655515(+) (pilD) [Acinetobacter johnsonii strain LXL_C1]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPQCKSA
IRWYQNVPVMSWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=302823 DT536_RS03140 WP_058868793.1 654655..655515(+) (pilD) [Acinetobacter johnsonii strain LXL_C1]
ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTAAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCCAATGTAAAAGTGCC
ATACGCTGGTATCAAAATGTCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
TATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGCGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA
TGTTGTTTGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG
TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG
GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC
GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCATATATTGCCAT
CGCAGGTTGGATTGCCTTTCTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.371	100	0.794
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	53.558	93.357	0.5
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434