Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DS740_RS13820 Genome accession   NZ_CP030937
Coordinates   2637813..2638430 (-) Length   205 a.a.
NCBI ID   WP_004398514.1    Uniprot ID   A0AAE2SLR2
Organism   Bacillus sp. DM2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2632813..2643430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS740_RS13795 (DS740_13795) rpsT 2633122..2633388 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  DS740_RS13800 (DS740_13800) holA 2633403..2634446 (-) 1044 WP_015714286.1 DNA polymerase III subunit delta -
  DS740_RS22780 - 2634486..2634635 (-) 150 WP_003229985.1 hypothetical protein -
  DS740_RS13805 (DS740_13805) - 2634676..2634810 (+) 135 WP_003229983.1 YqzM family protein -
  DS740_RS13810 (DS740_13810) comEC 2634850..2637180 (-) 2331 WP_074794436.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DS740_RS13815 (DS740_13815) - 2637177..2637746 (-) 570 WP_015714288.1 ComE operon protein 2 -
  DS740_RS13820 (DS740_13820) comEA 2637813..2638430 (-) 618 WP_004398514.1 competence protein ComEA Machinery gene
  DS740_RS13825 (DS740_13825) comER 2638514..2639335 (+) 822 WP_004398597.1 late competence protein ComER -
  DS740_RS13830 (DS740_13830) - 2639401..2640144 (-) 744 WP_003229973.1 class I SAM-dependent methyltransferase -
  DS740_RS13835 (DS740_13835) rsfS 2640141..2640497 (-) 357 WP_003229971.1 ribosome silencing factor -
  DS740_RS13840 (DS740_13840) yqeK 2640515..2641075 (-) 561 WP_004399059.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  DS740_RS13845 (DS740_13845) - 2641065..2641634 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  DS740_RS13850 (DS740_13850) yhbY 2641646..2641936 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  DS740_RS13855 (DS740_13855) aroE 2641930..2642772 (-) 843 WP_003229967.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21769.45 Da        Isoelectric Point: 4.7220

>NTDB_id=302617 DS740_RS13820 WP_004398514.1 2637813..2638430(-) (comEA) [Bacillus sp. DM2]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=302617 DS740_RS13820 WP_004398514.1 2637813..2638430(-) (comEA) [Bacillus sp. DM2]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGTCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39

Multiple sequence alignment