Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | DS740_RS13315 | Genome accession | NZ_CP030937 |
| Coordinates | 2550991..2551326 (+) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus sp. DM2 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2545991..2556326
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DS740_RS13295 (DS740_13295) | gcvT | 2546584..2547672 (-) | 1089 | WP_041850013.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| DS740_RS13300 (DS740_13300) | - | 2548113..2549786 (+) | 1674 | WP_041850014.1 | SNF2-related protein | - |
| DS740_RS13305 (DS740_13305) | - | 2549807..2550601 (+) | 795 | WP_003230200.1 | YqhG family protein | - |
| DS740_RS13310 (DS740_13310) | sinI | 2550784..2550957 (+) | 174 | WP_003230187.1 | anti-repressor SinI family protein | Regulator |
| DS740_RS13315 (DS740_13315) | sinR | 2550991..2551326 (+) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| DS740_RS13320 (DS740_13320) | tasA | 2551419..2552204 (-) | 786 | WP_015251717.1 | biofilm matrix protein TasA | - |
| DS740_RS13325 (DS740_13325) | - | 2552268..2552840 (-) | 573 | WP_003246088.1 | signal peptidase I | - |
| DS740_RS13330 (DS740_13330) | tapA | 2552824..2553585 (-) | 762 | WP_015251716.1 | amyloid fiber anchoring/assembly protein TapA | - |
| DS740_RS13335 (DS740_13335) | - | 2553857..2554183 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| DS740_RS13340 (DS740_13340) | - | 2554225..2554404 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| DS740_RS13345 (DS740_13345) | comGG | 2554475..2554849 (-) | 375 | WP_015251714.1 | ComG operon protein ComGG | Machinery gene |
| DS740_RS13350 (DS740_13350) | comGF | 2554850..2555233 (-) | 384 | WP_041850015.1 | ComG operon protein ComGF | Machinery gene |
| DS740_RS13355 (DS740_13355) | comGE | 2555259..2555606 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| DS740_RS13360 (DS740_13360) | comGD | 2555590..2556021 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| DS740_RS13365 (DS740_13365) | comGC | 2556011..2556307 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=302606 DS740_RS13315 WP_003226345.1 2550991..2551326(+) (sinR) [Bacillus sp. DM2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=302606 DS740_RS13315 WP_003226345.1 2550991..2551326(+) (sinR) [Bacillus sp. DM2]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |