Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DS740_RS13350 Genome accession   NZ_CP030937
Coordinates   2554850..2555233 (-) Length   127 a.a.
NCBI ID   WP_041850015.1    Uniprot ID   -
Organism   Bacillus sp. DM2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2549850..2560233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS740_RS13310 (DS740_13310) sinI 2550784..2550957 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  DS740_RS13315 (DS740_13315) sinR 2550991..2551326 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  DS740_RS13320 (DS740_13320) tasA 2551419..2552204 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  DS740_RS13325 (DS740_13325) - 2552268..2552840 (-) 573 WP_003246088.1 signal peptidase I -
  DS740_RS13330 (DS740_13330) tapA 2552824..2553585 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  DS740_RS13335 (DS740_13335) - 2553857..2554183 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  DS740_RS13340 (DS740_13340) - 2554225..2554404 (-) 180 WP_003230176.1 YqzE family protein -
  DS740_RS13345 (DS740_13345) comGG 2554475..2554849 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  DS740_RS13350 (DS740_13350) comGF 2554850..2555233 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  DS740_RS13355 (DS740_13355) comGE 2555259..2555606 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  DS740_RS13360 (DS740_13360) comGD 2555590..2556021 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  DS740_RS13365 (DS740_13365) comGC 2556011..2556307 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  DS740_RS13370 (DS740_13370) comGB 2556321..2557358 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  DS740_RS13375 (DS740_13375) comGA 2557345..2558415 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  DS740_RS13385 (DS740_13385) corA 2558826..2559779 (-) 954 WP_029317911.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14250.41 Da        Isoelectric Point: 6.4838

>NTDB_id=302608 DS740_RS13350 WP_041850015.1 2554850..2555233(-) (comGF) [Bacillus sp. DM2]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHIAAMKADIKNGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=302608 DS740_RS13350 WP_041850015.1 2554850..2555233(-) (comGF) [Bacillus sp. DM2]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCTATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTGCTGCCATGAAAGCTGATATTAAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACAGCTTTTCCGGTCTATTCGTATTTAGGAGGAGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

98.425

100

0.984

Multiple sequence alignment