Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   SYNPCC7002_RS17065 Genome accession   NC_010475
Coordinates   1431067..1433775 (-) Length   902 a.a.
NCBI ID   WP_012306991.1    Uniprot ID   B1XLS5
Organism   Picosynechococcus sp. PCC 7002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1426067..1438775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7002_RS06825 (SYNPCC7002_A1365) - 1426148..1426846 (-) 699 WP_012306984.1 TIGR00266 family protein -
  SYNPCC7002_RS06830 (SYNPCC7002_A1366) - 1426886..1427563 (-) 678 WP_012306985.1 TIGR00266 family protein -
  SYNPCC7002_RS06835 (SYNPCC7002_A1367) - 1427573..1428235 (-) 663 WP_012306986.1 TIGR00266 family protein -
  SYNPCC7002_RS06840 (SYNPCC7002_A1368) - 1428427..1428750 (+) 324 WP_012306987.1 DUF2605 domain-containing protein -
  SYNPCC7002_RS06845 (SYNPCC7002_A1369) - 1428793..1429389 (+) 597 WP_012306988.1 Npun_F5749 family FMN-dependent PPOX-type flavoprotein -
  SYNPCC7002_RS06850 (SYNPCC7002_A1370) modA 1429379..1430143 (-) 765 WP_159457026.1 molybdate ABC transporter substrate-binding protein -
  SYNPCC7002_RS06855 (SYNPCC7002_A1371) - 1430167..1430961 (-) 795 WP_012306990.1 MlaE family lipid ABC transporter permease subunit -
  SYNPCC7002_RS17065 (SYNPCC7002_A1372) pilJ 1431067..1433775 (-) 2709 WP_012306991.1 methyl-accepting chemotaxis protein Machinery gene
  SYNPCC7002_RS06865 (SYNPCC7002_A1373) - 1433916..1434452 (-) 537 WP_012306992.1 chemotaxis protein CheW -
  SYNPCC7002_RS06870 (SYNPCC7002_A1374) pilH 1434513..1434908 (-) 396 WP_012306993.1 response regulator transcription factor Machinery gene
  SYNPCC7002_RS06875 (SYNPCC7002_A1375) - 1435167..1436354 (-) 1188 WP_012306994.1 response regulator -
  SYNPCC7002_RS06880 (SYNPCC7002_A1376) hmpF 1436785..1438446 (+) 1662 WP_012306995.1 pilus motility taxis protein HmpF -

Sequence

Protein


Download         Length: 902 a.a.        Molecular weight: 98360.87 Da        Isoelectric Point: 3.9794

>NTDB_id=30257 SYNPCC7002_RS17065 WP_012306991.1 1431067..1433775(-) (pilJ) [Picosynechococcus sp. PCC 7002]
MPPSTTDYSKEYAEAQKAYYQNNLPEAEAIANRLLKDYPDDPHLLLLSGHISLGLQDLGRASAFYHRVLDVTNQRDYHEY
ARQGLTQVNAYSDQVNGHRETSGGQPTLTQPEDYPVAAEYNSPENFVTAAGEQSISADDYSEQWAEPELPLRNFPEDEET
FLVPHPGDRSPEPGLNQSLNDPFFEAEAGEFIEFNEDELVEFDSAAGLEEDGDFLGSEDTSPFDLDWSPTHENGRISADQ
DHFDAVDTAPLGFESESPTWLENPPLADADALTFDEPAHPSFAPDSLSPDEAADFDDEISLGSLGAELFDEEPEAPPKQD
EGGFLEEFGILNEQDLDDFGDLGSDILDDDQKMPDTGLFEAPLETPTTSGEFNFDDFPEELGLTEDDSLFITLGEDSLSG
GLGTDFTVSDKPQEIVAENPKGYLAWFENVPLQKKQLFTATGAAAASVIATLIVTVSVFQTTPAEQRPQTLWPVAKTGLL
TSLLAGAASFGTTLFFGKLTTRQIKRSTDNLQNQFDAVSQGNLNVKATVFAEDEFGALATGFNKMARVILNTTSEAQRRA
EETEQSKEDLQRQVIRLLDDVEGAARGDFTVQAEVTADVLGAVADAFNLTIQNLREIVQQVKQAARQVNKNAADSESFAR
GLSSDALRQAEELAVTLNSVQMMTDSIQRVAENAREAEEVARTASSTALKGGESVEHTVAGILQIRETVAETARKVKRLA
ESSQEISKIVAVVSQIASRTNLLALNASIEAARAGESGKGFAIVADEVRQLADRSAKALKEIEQIVLQIQSETSSVMTAM
EEGTQQVIDGTKRAEQAKQSLEDIIQVSNRIDALVRSITADTVEQRENSRAVAQVMQSVELTAQETSRESQRVAGSLQKL
VGIARDLLASVERFRIESTDEA

Nucleotide


Download         Length: 2709 bp        

>NTDB_id=30257 SYNPCC7002_RS17065 WP_012306991.1 1431067..1433775(-) (pilJ) [Picosynechococcus sp. PCC 7002]
ATGCCGCCCAGCACCACTGATTATTCAAAGGAGTATGCTGAGGCCCAGAAGGCCTATTATCAGAATAATTTGCCTGAAGC
AGAGGCGATCGCCAATCGGTTACTCAAAGATTACCCGGACGATCCCCATTTGCTCCTTTTAAGCGGCCATATTTCCCTTG
GTTTACAAGATTTAGGGCGGGCCTCCGCGTTCTACCATCGGGTTTTAGATGTCACCAACCAGCGGGACTACCATGAATAC
GCTCGCCAAGGTTTGACCCAGGTCAATGCCTACAGCGATCAAGTCAATGGTCACCGGGAAACCAGCGGTGGACAGCCGAC
CCTCACCCAGCCAGAAGATTATCCGGTTGCAGCAGAATACAACTCCCCAGAAAACTTTGTCACAGCAGCAGGGGAACAAT
CAATTTCGGCGGATGATTATTCAGAACAATGGGCAGAACCAGAGTTGCCCCTGAGAAATTTCCCGGAAGATGAAGAAACT
TTTTTAGTGCCCCACCCTGGCGATCGCTCCCCTGAACCAGGTTTAAATCAGTCCCTTAATGATCCTTTTTTCGAGGCAGA
GGCTGGCGAATTCATTGAATTTAACGAAGACGAATTGGTTGAATTCGATAGTGCGGCTGGCCTAGAAGAAGACGGAGATT
TCCTAGGGAGCGAAGATACGTCTCCTTTCGATTTAGATTGGTCACCGACCCATGAAAATGGCAGAATTTCAGCAGATCAA
GACCATTTTGATGCAGTGGATACTGCACCACTCGGCTTTGAAAGTGAGTCCCCCACTTGGCTCGAAAATCCTCCTTTAGC
CGATGCAGACGCATTGACATTTGATGAGCCAGCGCACCCAAGTTTTGCACCTGACTCCCTCTCCCCTGATGAGGCGGCAG
ATTTTGACGATGAAATTAGCTTGGGTAGCCTTGGGGCAGAACTATTTGATGAAGAACCAGAAGCGCCACCAAAACAGGAT
GAAGGGGGCTTTTTAGAGGAATTTGGCATTCTCAACGAACAGGATCTAGATGATTTTGGTGATCTCGGTTCGGATATTCT
CGATGATGACCAAAAAATGCCGGATACAGGTCTGTTTGAAGCGCCCCTAGAAACACCGACGACCTCAGGGGAGTTTAATT
TTGATGATTTTCCCGAAGAATTGGGCCTCACCGAAGACGACAGCCTATTTATCACCCTAGGGGAGGATAGTCTCTCTGGC
GGTCTAGGGACAGATTTTACTGTTTCTGATAAACCCCAAGAAATTGTCGCGGAAAACCCCAAAGGTTATTTGGCTTGGTT
TGAAAATGTGCCTCTCCAGAAAAAACAATTGTTCACTGCGACTGGCGCTGCTGCTGCATCGGTGATCGCCACTTTGATTG
TGACAGTGAGCGTATTTCAAACCACCCCAGCCGAACAACGGCCCCAAACCCTCTGGCCCGTGGCCAAAACAGGTTTACTC
ACTAGCTTATTGGCCGGGGCAGCCAGCTTTGGTACGACCCTCTTTTTTGGGAAGTTAACAACTCGGCAGATCAAACGTAG
CACTGACAACCTACAAAACCAGTTCGACGCGGTTTCCCAGGGGAATCTCAATGTCAAAGCAACGGTTTTTGCGGAGGATG
AGTTTGGTGCCTTAGCCACGGGCTTTAATAAAATGGCCCGGGTTATTTTAAATACCACCAGTGAGGCCCAGCGGCGAGCC
GAAGAAACAGAACAGTCCAAAGAAGACCTCCAGCGCCAGGTGATCCGCCTCCTTGATGATGTGGAAGGGGCCGCCCGGGG
AGACTTTACCGTCCAAGCAGAGGTCACAGCCGATGTTTTAGGGGCCGTCGCCGACGCCTTTAACCTCACCATTCAAAATC
TCCGGGAAATTGTTCAACAGGTTAAACAAGCGGCGCGCCAGGTGAATAAAAATGCTGCCGATAGTGAATCCTTTGCCCGG
GGTCTATCCAGTGATGCTCTCCGTCAAGCTGAAGAATTGGCCGTTACCCTCAACTCGGTACAGATGATGACGGATTCAAT
TCAGCGGGTTGCTGAAAACGCCCGGGAAGCTGAAGAAGTCGCTCGTACCGCTTCGAGTACAGCCCTCAAGGGGGGGGAAT
CCGTAGAGCACACCGTAGCCGGGATTTTACAGATTCGAGAAACGGTGGCCGAAACAGCCCGTAAGGTAAAACGCCTGGCT
GAGTCTTCCCAAGAAATTTCGAAAATTGTCGCGGTGGTCTCCCAGATTGCGTCCCGTACAAACCTCTTGGCGTTGAATGC
ATCCATTGAGGCGGCCCGGGCTGGGGAGTCAGGCAAAGGCTTTGCCATTGTGGCCGACGAAGTCCGTCAGTTGGCAGACC
GTTCTGCAAAAGCCCTGAAAGAAATCGAGCAAATTGTTTTACAAATTCAAAGTGAAACAAGTTCGGTAATGACCGCAATG
GAAGAGGGTACCCAGCAGGTTATTGACGGTACCAAACGGGCTGAACAAGCGAAGCAATCCCTAGAGGACATTATTCAGGT
ATCAAACCGTATTGATGCCCTCGTGCGCTCAATTACGGCGGATACCGTTGAACAGCGGGAGAATTCTCGTGCCGTGGCCC
AGGTGATGCAATCGGTAGAGTTAACCGCTCAGGAAACTTCCCGAGAATCTCAACGGGTGGCCGGATCGTTACAGAAATTG
GTGGGCATCGCCCGGGATCTGTTGGCTTCTGTGGAGCGATTCCGCATAGAATCCACGGATGAGGCGTAA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(679-860)

HAMP domain (HAMP)

(500-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1XLS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

46.09

100

0.49

Multiple sequence alignment