Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   SYNPCC7002_RS06870 Genome accession   NC_010475
Coordinates   1434513..1434908 (-) Length   131 a.a.
NCBI ID   WP_012306993.1    Uniprot ID   A0AAE8LM63
Organism   Picosynechococcus sp. PCC 7002     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429513..1439908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7002_RS06855 (SYNPCC7002_A1371) - 1430167..1430961 (-) 795 WP_012306990.1 MlaE family lipid ABC transporter permease subunit -
  SYNPCC7002_RS17065 (SYNPCC7002_A1372) pilJ 1431067..1433775 (-) 2709 WP_012306991.1 methyl-accepting chemotaxis protein Machinery gene
  SYNPCC7002_RS06865 (SYNPCC7002_A1373) - 1433916..1434452 (-) 537 WP_012306992.1 chemotaxis protein CheW -
  SYNPCC7002_RS06870 (SYNPCC7002_A1374) pilH 1434513..1434908 (-) 396 WP_012306993.1 response regulator transcription factor Machinery gene
  SYNPCC7002_RS06875 (SYNPCC7002_A1375) - 1435167..1436354 (-) 1188 WP_012306994.1 response regulator -
  SYNPCC7002_RS06880 (SYNPCC7002_A1376) hmpF 1436785..1438446 (+) 1662 WP_012306995.1 pilus motility taxis protein HmpF -
  SYNPCC7002_RS06885 (SYNPCC7002_A1377) - 1438458..1439432 (-) 975 WP_012306996.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14598.04 Da        Isoelectric Point: 6.3538

>NTDB_id=30249 SYNPCC7002_RS06870 WP_012306993.1 1434513..1434908(-) (pilH) [Picosynechococcus sp. PCC 7002]
MSRILVVEDSLSQREMISELLKGNGLTVDVAGDGLEALETLSQMAKNAAETLPNLIVLDIVMPRMNGYELCRRLKSDPKI
QNIPIVMCSSKGEEFDRYWGMKQGADAYIAKPFQPAELIGTIKQLLRSNKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=30249 SYNPCC7002_RS06870 WP_012306993.1 1434513..1434908(-) (pilH) [Picosynechococcus sp. PCC 7002]
ATGAGTAGAATTTTGGTTGTTGAGGATAGCCTCTCTCAACGGGAAATGATTTCAGAATTACTGAAAGGCAACGGCTTGAC
AGTGGATGTTGCCGGTGATGGTCTTGAGGCGTTAGAAACCCTCAGTCAAATGGCTAAAAATGCGGCTGAAACCCTGCCCA
ACTTAATTGTGCTCGACATTGTTATGCCACGGATGAACGGTTACGAACTCTGTCGTCGCCTCAAATCCGACCCAAAAATT
CAAAATATCCCCATTGTGATGTGCTCTTCAAAGGGGGAAGAATTTGACCGGTACTGGGGCATGAAGCAGGGAGCCGACGC
TTATATCGCGAAACCCTTTCAGCCAGCGGAGTTAATTGGCACCATCAAGCAACTCCTACGCAGCAATAAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

67.969

97.71

0.664

Multiple sequence alignment